Results 81 - 100 of 353 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10327 | 3' | -42.2 | NC_002687.1 | + | 208250 | 0.76 | 0.999827 |
Target: 5'- nGAUGGaAGCAGCAGUGACGACGACGg -3' miRNA: 3'- gUUGUUgUUGUUGUCGUUGUUGUUGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 208397 | 0.76 | 0.999827 |
Target: 5'- nGAUGGaAGCAGCAGUGACGACGACGg -3' miRNA: 3'- gUUGUUgUUGUUGUCGUUGUUGUUGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 225925 | 0.75 | 0.999866 |
Target: 5'- aCAACGGgGAUggUAGUGACAGCGACc -3' miRNA: 3'- -GUUGUUgUUGuuGUCGUUGUUGUUGu -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 225739 | 0.75 | 0.999866 |
Target: 5'- aCAACGGgGAUggUAGUGACAGCGACc -3' miRNA: 3'- -GUUGUUgUUGuuGUCGUUGUUGUUGu -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 210434 | 0.75 | 0.999866 |
Target: 5'- aCGGgAGCGACGGgAGCGACGggaGCGACAg -3' miRNA: 3'- -GUUgUUGUUGUUgUCGUUGU---UGUUGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 226111 | 0.75 | 0.999866 |
Target: 5'- aCAACGGgGAUggUAGUGACAGCGACc -3' miRNA: 3'- -GUUGUUgUUGuuGUCGUUGUUGUUGu -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 58241 | 0.75 | 0.999866 |
Target: 5'- gAGCAcCGACGAUGGCGuCAGCGACGg -3' miRNA: 3'- gUUGUuGUUGUUGUCGUuGUUGUUGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 18028 | 0.75 | 0.999898 |
Target: 5'- gGACGACugUggUAGCGACAGCGAUu -3' miRNA: 3'- gUUGUUGuuGuuGUCGUUGUUGUUGu -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 224227 | 0.75 | 0.999922 |
Target: 5'- uGGCGAUGGCGAUGGCGAUGGCGAUg -3' miRNA: 3'- gUUGUUGUUGUUGUCGUUGUUGUUGu -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 25804 | 0.75 | 0.999898 |
Target: 5'- uCGACGACAACAcccucCGGC-GCAACGGCGu -3' miRNA: 3'- -GUUGUUGUUGUu----GUCGuUGUUGUUGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 303851 | 0.75 | 0.999948 |
Target: 5'- aCAGCAGCGggccuagcccccggaGCAACcguAGCuGCAGCAGCAg -3' miRNA: 3'- -GUUGUUGU---------------UGUUG---UCGuUGUUGUUGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 63873 | 0.75 | 0.999931 |
Target: 5'- gGugGACAACuACGGCAACAcaccgcuucaucucuGCAACGa -3' miRNA: 3'- gUugUUGUUGuUGUCGUUGU---------------UGUUGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 88773 | 0.75 | 0.999898 |
Target: 5'- uGACGACgAGCggUAuuGCGACGACGACAa -3' miRNA: 3'- gUUGUUG-UUGuuGU--CGUUGUUGUUGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 149407 | 0.75 | 0.999892 |
Target: 5'- uCGACAGCAACcuuagguucauCAGCAuCAGCGACAc -3' miRNA: 3'- -GUUGUUGUUGuu---------GUCGUuGUUGUUGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 70712 | 0.75 | 0.999922 |
Target: 5'- -cACAACaAGCAugAGCAACAAgAGCu -3' miRNA: 3'- guUGUUG-UUGUugUCGUUGUUgUUGu -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 255672 | 0.75 | 0.999942 |
Target: 5'- uGAUGACggUggUAGCGACGACGAUg -3' miRNA: 3'- gUUGUUGuuGuuGUCGUUGUUGUUGu -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 224347 | 0.75 | 0.999922 |
Target: 5'- uGGCGAUGGCGAUGGCGAUGGCGAUg -3' miRNA: 3'- gUUGUUGUUGUUGUCGUUGUUGUUGu -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 226297 | 0.75 | 0.999866 |
Target: 5'- aCAACGGgGAUggUAGUGACAGCGACc -3' miRNA: 3'- -GUUGUUgUUGuuGUCGUUGUUGUUGu -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 75641 | 0.74 | 0.999952 |
Target: 5'- aGACGACGACAcCAGUGACAcgucggaggaccaaACAGCGg -3' miRNA: 3'- gUUGUUGUUGUuGUCGUUGU--------------UGUUGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 307715 | 0.74 | 0.999956 |
Target: 5'- cCGACAGCGAUgguGACGGCAuCAACGAa- -3' miRNA: 3'- -GUUGUUGUUG---UUGUCGUuGUUGUUgu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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