Results 1 - 20 of 353 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10327 | 3' | -42.2 | NC_002687.1 | + | 98032 | 1.12 | 0.089269 |
Target: 5'- aCAACAACAACAACAGCAACAACAACAa -3' miRNA: 3'- -GUUGUUGUUGUUGUCGUUGUUGUUGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 102587 | 1.12 | 0.089269 |
Target: 5'- aCAGCAACAGCAACAGCAGCAGCAACAa -3' miRNA: 3'- -GUUGUUGUUGUUGUCGUUGUUGUUGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 102527 | 1.11 | 0.097143 |
Target: 5'- gCAGCAACAACAACAGCAGCAACAGCAa -3' miRNA: 3'- -GUUGUUGUUGUUGUCGUUGUUGUUGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 208192 | 1.1 | 0.105669 |
Target: 5'- gCAGCAGCAGCAGCAGCAGCAGCGACAg -3' miRNA: 3'- -GUUGUUGUUGUUGUCGUUGUUGUUGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 291707 | 1.07 | 0.159784 |
Target: 5'- gCAGCAGCGGCAGCAGCAGCAGCAGCGc -3' miRNA: 3'- -GUUGUUGUUGUUGUCGUUGUUGUUGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 102730 | 1.06 | 0.182795 |
Target: 5'- aCAGCGACAGCGACGGCGACAGCGACGg -3' miRNA: 3'- -GUUGUUGUUGUUGUCGUUGUUGUUGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 102766 | 1.05 | 0.187735 |
Target: 5'- aCGGCGACAGCGACGGCGACAGCGACAg -3' miRNA: 3'- -GUUGUUGUUGUUGUCGUUGUUGUUGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 11316 | 1.02 | 0.26325 |
Target: 5'- uCAGCAGCAGCAGCAGUAGCGGCGGCAg -3' miRNA: 3'- -GUUGUUGUUGUUGUCGUUGUUGUUGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 323333 | 0.99 | 0.370204 |
Target: 5'- gAugAACGGCAACAGCAGCAGCAGCAg -3' miRNA: 3'- gUugUUGUUGUUGUCGUUGUUGUUGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 291736 | 0.98 | 0.396671 |
Target: 5'- aAGCAGCGACcGCAGCAGCAGCAACAg -3' miRNA: 3'- gUUGUUGUUGuUGUCGUUGUUGUUGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 316995 | 0.98 | 0.424325 |
Target: 5'- --gUAGCAGCAACAGCAACAACAACAa -3' miRNA: 3'- guuGUUGUUGUUGUCGUUGUUGUUGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 224455 | 0.96 | 0.482903 |
Target: 5'- uGGCGGCGGCAGCGGCAGCGGCAGCu -3' miRNA: 3'- gUUGUUGUUGUUGUCGUUGUUGUUGu -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 293526 | 0.96 | 0.503288 |
Target: 5'- cCAGCGguacauguACAGCAGCAGCGACAGCAGCAg -3' miRNA: 3'- -GUUGU--------UGUUGUUGUCGUUGUUGUUGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 11403 | 0.95 | 0.545107 |
Target: 5'- gCAGCAGCGguagcggugGCAGCAGCGGCAGCAGCAg -3' miRNA: 3'- -GUUGUUGU---------UGUUGUCGUUGUUGUUGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 208567 | 0.95 | 0.545107 |
Target: 5'- gCAGCAGCGACGauggaGCAGCAGCGACGACGa -3' miRNA: 3'- -GUUGUUGUUGU-----UGUCGUUGUUGUUGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 208219 | 0.94 | 0.587985 |
Target: 5'- gCAGCAGCGACGauggaaGCAGCAGCGACGACGa -3' miRNA: 3'- -GUUGUUGUUGU------UGUCGUUGUUGUUGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 208366 | 0.94 | 0.587985 |
Target: 5'- gCAGCAGCGACGauggaaGCAGCAGCGACGACGa -3' miRNA: 3'- -GUUGUUGUUGU------UGUCGUUGUUGUUGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 208513 | 0.93 | 0.631435 |
Target: 5'- gCAGCAGCGACGAUggaAGCAGCAGCGACGa -3' miRNA: 3'- -GUUGUUGUUGUUG---UCGUUGUUGUUGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 283182 | 0.93 | 0.642322 |
Target: 5'- aAGCGGCAGCAACAGgGGCGGCAGCAc -3' miRNA: 3'- gUUGUUGUUGUUGUCgUUGUUGUUGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 282945 | 0.91 | 0.69642 |
Target: 5'- uCAGCAGCAGCAggaACAGCAACAGCAgaaACAa -3' miRNA: 3'- -GUUGUUGUUGU---UGUCGUUGUUGU---UGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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