miRNA display CGI


Results 41 - 60 of 353 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10327 3' -42.2 NC_002687.1 + 169872 0.81 0.983955
Target:  5'- uCAGCAACAAUGuCAGCAACAaugucaGCAACAa -3'
miRNA:   3'- -GUUGUUGUUGUuGUCGUUGU------UGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 173293 0.81 0.985828
Target:  5'- cCAGCAGCcuCGAUAGCGcggGCGACAGCAg -3'
miRNA:   3'- -GUUGUUGuuGUUGUCGU---UGUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 42054 0.81 0.987529
Target:  5'- gCAACAGCGuacAUAGCAGCcugGACGACGGCAg -3'
miRNA:   3'- -GUUGUUGU---UGUUGUCG---UUGUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 11341 0.81 0.987529
Target:  5'- nAGCAGgAGCAGCgggugucggAGCAGCAGCAGCAg -3'
miRNA:   3'- gUUGUUgUUGUUG---------UCGUUGUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 178912 0.81 0.987529
Target:  5'- -uGCAACGGCGugGGCAACAcACAACu -3'
miRNA:   3'- guUGUUGUUGUugUCGUUGU-UGUUGu -5'
10327 3' -42.2 NC_002687.1 + 16621 0.81 0.989068
Target:  5'- uCAGCAcacACAGCAggcACAGCAguguGCAGCAACAc -3'
miRNA:   3'- -GUUGU---UGUUGU---UGUCGU----UGUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 284350 0.8 0.9917
Target:  5'- aAGCGGCAACAuucGCAGUGACAGCAcCAg -3'
miRNA:   3'- gUUGUUGUUGU---UGUCGUUGUUGUuGU- -5'
10327 3' -42.2 NC_002687.1 + 48399 0.8 0.992812
Target:  5'- aUAAU-ACAGCAACAGCAGCAGCuGCu -3'
miRNA:   3'- -GUUGuUGUUGUUGUCGUUGUUGuUGu -5'
10327 3' -42.2 NC_002687.1 + 73330 0.8 0.99468
Target:  5'- ---aGACggUGACGGCGACAGCAACGc -3'
miRNA:   3'- guugUUGuuGUUGUCGUUGUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 96359 0.79 0.995455
Target:  5'- gGACAACAaacaagccgccgGCAugAGCAAgGACAGCAc -3'
miRNA:   3'- gUUGUUGU------------UGUugUCGUUgUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 102395 0.79 0.995455
Target:  5'- cCAGCAACAgauGCAGCAgauGCAGCAcauACAGCAc -3'
miRNA:   3'- -GUUGUUGU---UGUUGU---CGUUGU---UGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 158793 0.79 0.995455
Target:  5'- cCGAUGugAugcACGGCGGCGACAACGACGg -3'
miRNA:   3'- -GUUGUugU---UGUUGUCGUUGUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 290822 0.79 0.996135
Target:  5'- gGACGuauCAGCGGCGGCAAuuCAGCGGCAa -3'
miRNA:   3'- gUUGUu--GUUGUUGUCGUU--GUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 79174 0.79 0.996729
Target:  5'- uUAACAACAACGugGGCuGCAAUGACc -3'
miRNA:   3'- -GUUGUUGUUGUugUCGuUGUUGUUGu -5'
10327 3' -42.2 NC_002687.1 + 282158 0.79 0.996729
Target:  5'- -uGCGGCGGCAGCGGCGggaguagggccuGCGGCGGCGg -3'
miRNA:   3'- guUGUUGUUGUUGUCGU------------UGUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 210591 0.79 0.996729
Target:  5'- uCAGCAGCGACAAUAcGCGucuccGCAGCAAUAc -3'
miRNA:   3'- -GUUGUUGUUGUUGU-CGU-----UGUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 12408 0.79 0.997432
Target:  5'- aGACAGCAGCAuaacucaaagcuguuACAGCAAU-ACAACAg -3'
miRNA:   3'- gUUGUUGUUGU---------------UGUCGUUGuUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 208171 0.78 0.998077
Target:  5'- cCGACAGCAACAACGGUAGCAn----- -3'
miRNA:   3'- -GUUGUUGUUGUUGUCGUUGUuguugu -5'
10327 3' -42.2 NC_002687.1 + 173128 0.78 0.998077
Target:  5'- gAGCAACAAagggaAACGGCAGCAcaagaaGCAACAc -3'
miRNA:   3'- gUUGUUGUUg----UUGUCGUUGU------UGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 215393 0.78 0.998077
Target:  5'- gCGugGACGucuggaaacaguGCGGCGGCGACGACGACu -3'
miRNA:   3'- -GUugUUGU------------UGUUGUCGUUGUUGUUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.