miRNA display CGI


Results 61 - 80 of 353 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10327 3' -42.2 NC_002687.1 + 133509 0.78 0.998687
Target:  5'- -uACAGgGACAAUAGCAACGacccACAGCAc -3'
miRNA:   3'- guUGUUgUUGUUGUCGUUGU----UGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 201081 0.78 0.998687
Target:  5'- --uCAGCAGCAAgucCAGCAugGCGACGACAa -3'
miRNA:   3'- guuGUUGUUGUU---GUCGU--UGUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 328513 0.77 0.998924
Target:  5'- gAAgAGCAGCGGCAGCGugACAAgAACAa -3'
miRNA:   3'- gUUgUUGUUGUUGUCGU--UGUUgUUGU- -5'
10327 3' -42.2 NC_002687.1 + 20482 0.77 0.999124
Target:  5'- cCAACAACGagagcacgaggcACAGCguauGGCGACGGCAACGu -3'
miRNA:   3'- -GUUGUUGU------------UGUUG----UCGUUGUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 196317 0.77 0.999124
Target:  5'- cCAACAACGagagcacgaggcACAGCguauGGCGACGGCAACGu -3'
miRNA:   3'- -GUUGUUGU------------UGUUG----UCGUUGUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 208753 0.77 0.999124
Target:  5'- gGACGACAcgggUAGCGGUGACGACGACGa -3'
miRNA:   3'- gUUGUUGUu---GUUGUCGUUGUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 208681 0.77 0.999124
Target:  5'- gGACGACAcaggUAGCGGUGACGACGACGa -3'
miRNA:   3'- gUUGUUGUu---GUUGUCGUUGUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 221908 0.77 0.999124
Target:  5'- cCAACAACGagagcacgaggcACAGCguauGGCGACGGCAACGu -3'
miRNA:   3'- -GUUGUUGU------------UGUUG----UCGUUGUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 303208 0.77 0.999291
Target:  5'- cCAGCAgaaGCAACAcCAGCAGCAGCugUAg -3'
miRNA:   3'- -GUUGU---UGUUGUuGUCGUUGUUGuuGU- -5'
10327 3' -42.2 NC_002687.1 + 261320 0.77 0.999291
Target:  5'- gGGCGGCGGCAACGGCAugGCGAagggcucgauCAACAg -3'
miRNA:   3'- gUUGUUGUUGUUGUCGU--UGUU----------GUUGU- -5'
10327 3' -42.2 NC_002687.1 + 148025 0.77 0.999291
Target:  5'- cCAACGGCAuagccauCAACGGCAuagccaucaACGACGACAu -3'
miRNA:   3'- -GUUGUUGUu------GUUGUCGU---------UGUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 208825 0.77 0.99943
Target:  5'- uGACGACcguGACGACGGUggugccGACAACGACAa -3'
miRNA:   3'- gUUGUUG---UUGUUGUCG------UUGUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 60115 0.77 0.99943
Target:  5'- aCGAUGACAuCGugAGCAGCGACAAUu -3'
miRNA:   3'- -GUUGUUGUuGUugUCGUUGUUGUUGu -5'
10327 3' -42.2 NC_002687.1 + 71800 0.77 0.99943
Target:  5'- gCGGCGAuCGACGACGGCGucuCGAUAGCGa -3'
miRNA:   3'- -GUUGUU-GUUGUUGUCGUu--GUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 281599 0.77 0.999544
Target:  5'- aGGCAGCAAC-GCGGCAcgAACAGCAu -3'
miRNA:   3'- gUUGUUGUUGuUGUCGUugUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 200098 0.76 0.999638
Target:  5'- gGACGGCGuuGACAGCAGCGcgaACAGCu -3'
miRNA:   3'- gUUGUUGUugUUGUCGUUGU---UGUUGu -5'
10327 3' -42.2 NC_002687.1 + 90245 0.76 0.999715
Target:  5'- uGAUAGCGACGAagaaucaucCAGCGACGACGAUu -3'
miRNA:   3'- gUUGUUGUUGUU---------GUCGUUGUUGUUGu -5'
10327 3' -42.2 NC_002687.1 + 78553 0.76 0.999715
Target:  5'- aAGCcAUcGCAACAGCAcCAACAACAa -3'
miRNA:   3'- gUUGuUGuUGUUGUCGUuGUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 105904 0.76 0.999715
Target:  5'- aGACAuCAAgGACAGCcccuGCGGCAACAa -3'
miRNA:   3'- gUUGUuGUUgUUGUCGu---UGUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 208250 0.76 0.999827
Target:  5'- nGAUGGaAGCAGCAGUGACGACGACGg -3'
miRNA:   3'- gUUGUUgUUGUUGUCGUUGUUGUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.