miRNA display CGI


Results 81 - 100 of 353 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10327 3' -42.2 NC_002687.1 + 208250 0.76 0.999827
Target:  5'- nGAUGGaAGCAGCAGUGACGACGACGg -3'
miRNA:   3'- gUUGUUgUUGUUGUCGUUGUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 208397 0.76 0.999827
Target:  5'- nGAUGGaAGCAGCAGUGACGACGACGg -3'
miRNA:   3'- gUUGUUgUUGUUGUCGUUGUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 225739 0.75 0.999866
Target:  5'- aCAACGGgGAUggUAGUGACAGCGACc -3'
miRNA:   3'- -GUUGUUgUUGuuGUCGUUGUUGUUGu -5'
10327 3' -42.2 NC_002687.1 + 225925 0.75 0.999866
Target:  5'- aCAACGGgGAUggUAGUGACAGCGACc -3'
miRNA:   3'- -GUUGUUgUUGuuGUCGUUGUUGUUGu -5'
10327 3' -42.2 NC_002687.1 + 226297 0.75 0.999866
Target:  5'- aCAACGGgGAUggUAGUGACAGCGACc -3'
miRNA:   3'- -GUUGUUgUUGuuGUCGUUGUUGUUGu -5'
10327 3' -42.2 NC_002687.1 + 58241 0.75 0.999866
Target:  5'- gAGCAcCGACGAUGGCGuCAGCGACGg -3'
miRNA:   3'- gUUGUuGUUGUUGUCGUuGUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 210434 0.75 0.999866
Target:  5'- aCGGgAGCGACGGgAGCGACGggaGCGACAg -3'
miRNA:   3'- -GUUgUUGUUGUUgUCGUUGU---UGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 226111 0.75 0.999866
Target:  5'- aCAACGGgGAUggUAGUGACAGCGACc -3'
miRNA:   3'- -GUUGUUgUUGuuGUCGUUGUUGUUGu -5'
10327 3' -42.2 NC_002687.1 + 149407 0.75 0.999892
Target:  5'- uCGACAGCAACcuuagguucauCAGCAuCAGCGACAc -3'
miRNA:   3'- -GUUGUUGUUGuu---------GUCGUuGUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 18028 0.75 0.999898
Target:  5'- gGACGACugUggUAGCGACAGCGAUu -3'
miRNA:   3'- gUUGUUGuuGuuGUCGUUGUUGUUGu -5'
10327 3' -42.2 NC_002687.1 + 88773 0.75 0.999898
Target:  5'- uGACGACgAGCggUAuuGCGACGACGACAa -3'
miRNA:   3'- gUUGUUG-UUGuuGU--CGUUGUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 25804 0.75 0.999898
Target:  5'- uCGACGACAACAcccucCGGC-GCAACGGCGu -3'
miRNA:   3'- -GUUGUUGUUGUu----GUCGuUGUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 224347 0.75 0.999922
Target:  5'- uGGCGAUGGCGAUGGCGAUGGCGAUg -3'
miRNA:   3'- gUUGUUGUUGUUGUCGUUGUUGUUGu -5'
10327 3' -42.2 NC_002687.1 + 224227 0.75 0.999922
Target:  5'- uGGCGAUGGCGAUGGCGAUGGCGAUg -3'
miRNA:   3'- gUUGUUGUUGUUGUCGUUGUUGUUGu -5'
10327 3' -42.2 NC_002687.1 + 70712 0.75 0.999922
Target:  5'- -cACAACaAGCAugAGCAACAAgAGCu -3'
miRNA:   3'- guUGUUG-UUGUugUCGUUGUUgUUGu -5'
10327 3' -42.2 NC_002687.1 + 63873 0.75 0.999931
Target:  5'- gGugGACAACuACGGCAACAcaccgcuucaucucuGCAACGa -3'
miRNA:   3'- gUugUUGUUGuUGUCGUUGU---------------UGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 255672 0.75 0.999942
Target:  5'- uGAUGACggUggUAGCGACGACGAUg -3'
miRNA:   3'- gUUGUUGuuGuuGUCGUUGUUGUUGu -5'
10327 3' -42.2 NC_002687.1 + 303851 0.75 0.999948
Target:  5'- aCAGCAGCGggccuagcccccggaGCAACcguAGCuGCAGCAGCAg -3'
miRNA:   3'- -GUUGUUGU---------------UGUUG---UCGuUGUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 75641 0.74 0.999952
Target:  5'- aGACGACGACAcCAGUGACAcgucggaggaccaaACAGCGg -3'
miRNA:   3'- gUUGUUGUUGUuGUCGUUGU--------------UGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 307715 0.74 0.999956
Target:  5'- cCGACAGCGAUgguGACGGCAuCAACGAa- -3'
miRNA:   3'- -GUUGUUGUUG---UUGUCGUuGUUGUUgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.