miRNA display CGI


Results 101 - 120 of 353 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10327 3' -42.2 NC_002687.1 + 307715 0.74 0.999956
Target:  5'- cCGACAGCGAUgguGACGGCAuCAACGAa- -3'
miRNA:   3'- -GUUGUUGUUG---UUGUCGUuGUUGUUgu -5'
10327 3' -42.2 NC_002687.1 + 269731 0.74 0.999956
Target:  5'- -uGCGACAACAAUGGauACAACGACGg -3'
miRNA:   3'- guUGUUGUUGUUGUCguUGUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 110527 0.74 0.999956
Target:  5'- aGACAAC-ACcGCAGUAGCGuuGCAACAg -3'
miRNA:   3'- gUUGUUGuUGuUGUCGUUGU--UGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 29888 0.74 0.999956
Target:  5'- --cCAACAACGACGGCcuCGAUAACc -3'
miRNA:   3'- guuGUUGUUGUUGUCGuuGUUGUUGu -5'
10327 3' -42.2 NC_002687.1 + 326645 0.74 0.999968
Target:  5'- -cACAACAcuauagaaaACAAUGGUGACAGCGGCAu -3'
miRNA:   3'- guUGUUGU---------UGUUGUCGUUGUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 133846 0.74 0.999968
Target:  5'- aGACGACGcuguGC-GCGGUAGCAGCAACu -3'
miRNA:   3'- gUUGUUGU----UGuUGUCGUUGUUGUUGu -5'
10327 3' -42.2 NC_002687.1 + 81845 0.74 0.999976
Target:  5'- cCGACGGCGACAACGGgAAUgguGAUGACGa -3'
miRNA:   3'- -GUUGUUGUUGUUGUCgUUG---UUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 326571 0.74 0.999976
Target:  5'- cCAACAaccacgugcACGACAACGGCGGCGugGGa- -3'
miRNA:   3'- -GUUGU---------UGUUGUUGUCGUUGUugUUgu -5'
10327 3' -42.2 NC_002687.1 + 28667 0.74 0.999976
Target:  5'- gGACGACGugcuuGCAAUGGCAGCGAuCGACu -3'
miRNA:   3'- gUUGUUGU-----UGUUGUCGUUGUU-GUUGu -5'
10327 3' -42.2 NC_002687.1 + 14309 0.74 0.999983
Target:  5'- uCAGCAcacACAGCAggcACAGCAGugugUAGCAACAc -3'
miRNA:   3'- -GUUGU---UGUUGU---UGUCGUU----GUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 14574 0.74 0.999983
Target:  5'- uCAGCAcacACAGCAggcACAGCAGugugUAGCAACAc -3'
miRNA:   3'- -GUUGU---UGUUGU---UGUCGUU----GUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 16290 0.74 0.999983
Target:  5'- uCAGCAcacACAGCAggcACAGCAGugugUAGCAACAc -3'
miRNA:   3'- -GUUGU---UGUUGU---UGUCGUU----GUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 13716 0.74 0.999983
Target:  5'- uCAGCAcacACAGCAggcACAGCAGugugUAGCAACAc -3'
miRNA:   3'- -GUUGU---UGUUGU---UGUCGUU----GUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 15167 0.74 0.999983
Target:  5'- uCAGCAcacACAGCAggcACAGCAGugugUAGCAACAc -3'
miRNA:   3'- -GUUGU---UGUUGU---UGUCGUU----GUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 16025 0.74 0.999983
Target:  5'- uCAGCAcacACAGCAggcACAGCAGugugUAGCAACAc -3'
miRNA:   3'- -GUUGU---UGUUGU---UGUCGUU----GUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 15433 0.74 0.999983
Target:  5'- uCAGCAcacACAGCAggcACAGCAGugugUAGCAACAc -3'
miRNA:   3'- -GUUGU---UGUUGU---UGUCGUU----GUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 69293 0.73 0.999987
Target:  5'- uGACGAUGAUAACAGC-ACAACAucuagugGCAg -3'
miRNA:   3'- gUUGUUGUUGUUGUCGuUGUUGU-------UGU- -5'
10327 3' -42.2 NC_002687.1 + 284391 0.73 0.999988
Target:  5'- uCAGCAgguGCAuCGACAGCuuccggAGCGGCAGCAu -3'
miRNA:   3'- -GUUGU---UGUuGUUGUCG------UUGUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 167285 0.73 0.999988
Target:  5'- aAACAGCGACAGCuGGUcgGAgAACGACAu -3'
miRNA:   3'- gUUGUUGUUGUUG-UCG--UUgUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 182012 0.73 0.999991
Target:  5'- aAGCAcgcGCAACAccuauCGGCGAUGACGGCAg -3'
miRNA:   3'- gUUGU---UGUUGUu----GUCGUUGUUGUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.