miRNA display CGI


Results 61 - 80 of 353 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10327 3' -42.2 NC_002687.1 + 150074 0.66 1
Target:  5'- gAGCAACAcuuCGAUAGUGgaaauuguugcacACAACAACGa -3'
miRNA:   3'- gUUGUUGUu--GUUGUCGU-------------UGUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 118178 0.67 1
Target:  5'- gAACGAgGACGACGGUgccgcgccugcgucgAACGAgGACGa -3'
miRNA:   3'- gUUGUUgUUGUUGUCG---------------UUGUUgUUGU- -5'
10327 3' -42.2 NC_002687.1 + 239072 0.67 1
Target:  5'- --cCAACGACAAUGGCAuccACAagaguuucacgcGCAGCGu -3'
miRNA:   3'- guuGUUGUUGUUGUCGU---UGU------------UGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 298420 0.67 1
Target:  5'- aAGCAcGCGcGCGGCGGCGGCcGCGGCc -3'
miRNA:   3'- gUUGU-UGU-UGUUGUCGUUGuUGUUGu -5'
10327 3' -42.2 NC_002687.1 + 306497 0.67 1
Target:  5'- cCGACAACAACGAgaaGGCAuuuggACAccuguuggACGGCAa -3'
miRNA:   3'- -GUUGUUGUUGUUg--UCGU-----UGU--------UGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 201799 0.67 1
Target:  5'- aAGCAACGACAAUgaacuGCAuACAuCAACGu -3'
miRNA:   3'- gUUGUUGUUGUUGu----CGU-UGUuGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 61876 0.67 1
Target:  5'- gAACAACcucucuGGCGACGuGCGACGGCGuCAa -3'
miRNA:   3'- gUUGUUG------UUGUUGU-CGUUGUUGUuGU- -5'
10327 3' -42.2 NC_002687.1 + 93695 0.67 1
Target:  5'- cCAAUAuACGACAAgAGUAACA-CAACc -3'
miRNA:   3'- -GUUGU-UGUUGUUgUCGUUGUuGUUGu -5'
10327 3' -42.2 NC_002687.1 + 316196 0.67 1
Target:  5'- -uGCGGCGggaucuucggguGCGGCGGCGGCAcccggcGCGGCGg -3'
miRNA:   3'- guUGUUGU------------UGUUGUCGUUGU------UGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 27550 0.67 1
Target:  5'- uCAGCGACcgUGuCGGgGGCGACGACAu -3'
miRNA:   3'- -GUUGUUGuuGUuGUCgUUGUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 251755 0.67 1
Target:  5'- uCGACAACGugcuggcuuucaACGACAGCucgagAAUGACGACc -3'
miRNA:   3'- -GUUGUUGU------------UGUUGUCG-----UUGUUGUUGu -5'
10327 3' -42.2 NC_002687.1 + 215897 0.67 1
Target:  5'- aAACAAUugUAACAGCGGCcAgGACGc -3'
miRNA:   3'- gUUGUUGuuGUUGUCGUUGuUgUUGU- -5'
10327 3' -42.2 NC_002687.1 + 118238 0.67 1
Target:  5'- gAACGAgGACGACGGUgcagcgccugcgucgAACGAgGACGa -3'
miRNA:   3'- gUUGUUgUUGUUGUCG---------------UUGUUgUUGU- -5'
10327 3' -42.2 NC_002687.1 + 307647 0.67 1
Target:  5'- uCGGCGGCggUGGCGGUgguggugcuggcacgGGCGGCGGCGg -3'
miRNA:   3'- -GUUGUUGuuGUUGUCG---------------UUGUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 159185 0.67 1
Target:  5'- gGGCuuuCGAC--CGGCGGCGACGGCGg -3'
miRNA:   3'- gUUGuu-GUUGuuGUCGUUGUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 238227 0.67 1
Target:  5'- uCAGCGcCGACGcCGGCAACGugAAa- -3'
miRNA:   3'- -GUUGUuGUUGUuGUCGUUGUugUUgu -5'
10327 3' -42.2 NC_002687.1 + 41347 0.67 1
Target:  5'- gCAGgAACAGCugacuCAGCAGCu-CGACGc -3'
miRNA:   3'- -GUUgUUGUUGuu---GUCGUUGuuGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 312450 0.67 1
Target:  5'- gAACAGCAccACAcaguGCaAGCGGCGcucACAGCAc -3'
miRNA:   3'- gUUGUUGU--UGU----UG-UCGUUGU---UGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 182422 0.67 1
Target:  5'- --cCGAgGACAugGGCAACGcucggGCAACc -3'
miRNA:   3'- guuGUUgUUGUugUCGUUGU-----UGUUGu -5'
10327 3' -42.2 NC_002687.1 + 224633 0.67 1
Target:  5'- uCAGCAuCGGCAuCGGCAuCGGCAucgGCAg -3'
miRNA:   3'- -GUUGUuGUUGUuGUCGUuGUUGU---UGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.