Results 81 - 100 of 353 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10327 | 3' | -42.2 | NC_002687.1 | + | 46402 | 0.67 | 1 |
Target: 5'- uGACAagACAACGGCGGguGCAAaaagcugGACAg -3' miRNA: 3'- gUUGU--UGUUGUUGUCguUGUUg------UUGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 17790 | 0.67 | 1 |
Target: 5'- aAGCAGCcGCuGCGGCuGCAACGcuugGCAu -3' miRNA: 3'- gUUGUUGuUGuUGUCGuUGUUGU----UGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 18123 | 0.67 | 1 |
Target: 5'- aAGCAGCcGCuGCGGCuGCAACGcuuaGCAu -3' miRNA: 3'- gUUGUUGuUGuUGUCGuUGUUGU----UGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 126819 | 0.67 | 1 |
Target: 5'- -uACAGCAGCAACcugGGCGcuccucgacccgGCGGCAugAg -3' miRNA: 3'- guUGUUGUUGUUG---UCGU------------UGUUGUugU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 161771 | 0.67 | 1 |
Target: 5'- -cGCAcguGCuuCGACAGUuccGACGACGGCAu -3' miRNA: 3'- guUGU---UGuuGUUGUCG---UUGUUGUUGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 110139 | 0.68 | 1 |
Target: 5'- uUAACGA-GACucuuCGGCAAUGACAGCAa -3' miRNA: 3'- -GUUGUUgUUGuu--GUCGUUGUUGUUGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 204927 | 0.68 | 1 |
Target: 5'- cCGGCuuCGGCAugacacacgcggGCGGCGACGACuACGc -3' miRNA: 3'- -GUUGuuGUUGU------------UGUCGUUGUUGuUGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 27550 | 0.67 | 1 |
Target: 5'- uCAGCGACcgUGuCGGgGGCGACGACAu -3' miRNA: 3'- -GUUGUUGuuGUuGUCgUUGUUGUUGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 316196 | 0.67 | 1 |
Target: 5'- -uGCGGCGggaucuucggguGCGGCGGCGGCAcccggcGCGGCGg -3' miRNA: 3'- guUGUUGU------------UGUUGUCGUUGU------UGUUGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 93695 | 0.67 | 1 |
Target: 5'- cCAAUAuACGACAAgAGUAACA-CAACc -3' miRNA: 3'- -GUUGU-UGUUGUUgUCGUUGUuGUUGu -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 312450 | 0.67 | 1 |
Target: 5'- gAACAGCAccACAcaguGCaAGCGGCGcucACAGCAc -3' miRNA: 3'- gUUGUUGU--UGU----UG-UCGUUGU---UGUUGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 182422 | 0.67 | 1 |
Target: 5'- --cCGAgGACAugGGCAACGcucggGCAACc -3' miRNA: 3'- guuGUUgUUGUugUCGUUGU-----UGUUGu -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 224633 | 0.67 | 1 |
Target: 5'- uCAGCAuCGGCAuCGGCAuCGGCAucgGCAg -3' miRNA: 3'- -GUUGUuGUUGUuGUCGUuGUUGU---UGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 215897 | 0.67 | 1 |
Target: 5'- aAACAAUugUAACAGCGGCcAgGACGc -3' miRNA: 3'- gUUGUUGuuGUUGUCGUUGuUgUUGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 251755 | 0.67 | 1 |
Target: 5'- uCGACAACGugcuggcuuucaACGACAGCucgagAAUGACGACc -3' miRNA: 3'- -GUUGUUGU------------UGUUGUCG-----UUGUUGUUGu -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 239072 | 0.67 | 1 |
Target: 5'- --cCAACGACAAUGGCAuccACAagaguuucacgcGCAGCGu -3' miRNA: 3'- guuGUUGUUGUUGUCGU---UGU------------UGUUGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 298420 | 0.67 | 1 |
Target: 5'- aAGCAcGCGcGCGGCGGCGGCcGCGGCc -3' miRNA: 3'- gUUGU-UGU-UGUUGUCGUUGuUGUUGu -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 306497 | 0.67 | 1 |
Target: 5'- cCGACAACAACGAgaaGGCAuuuggACAccuguuggACGGCAa -3' miRNA: 3'- -GUUGUUGUUGUUg--UCGU-----UGU--------UGUUGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 201799 | 0.67 | 1 |
Target: 5'- aAGCAACGACAAUgaacuGCAuACAuCAACGu -3' miRNA: 3'- gUUGUUGUUGUUGu----CGU-UGUuGUUGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 61876 | 0.67 | 1 |
Target: 5'- gAACAACcucucuGGCGACGuGCGACGGCGuCAa -3' miRNA: 3'- gUUGUUG------UUGUUGU-CGUUGUUGUuGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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