miRNA display CGI


Results 1 - 20 of 353 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10327 3' -42.2 NC_002687.1 + 3430 0.69 1
Target:  5'- uCGACAGucGCAugAGCGACGGauCAACGg -3'
miRNA:   3'- -GUUGUUguUGUugUCGUUGUU--GUUGU- -5'
10327 3' -42.2 NC_002687.1 + 6249 0.66 1
Target:  5'- aCAACAugAACGACAaauGguAUuuCAGCAu -3'
miRNA:   3'- -GUUGUugUUGUUGU---CguUGuuGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 7912 0.68 1
Target:  5'- aAACGACGACGguggcggaaggcagaACGGUAACGucCAGCGu -3'
miRNA:   3'- gUUGUUGUUGU---------------UGUCGUUGUu-GUUGU- -5'
10327 3' -42.2 NC_002687.1 + 10051 0.9 0.748988
Target:  5'- gCAGCAGCAGCAGCAGUAGCAGuagUAGCAg -3'
miRNA:   3'- -GUUGUUGUUGUUGUCGUUGUU---GUUGU- -5'
10327 3' -42.2 NC_002687.1 + 10180 0.68 1
Target:  5'- aCGGCAAgGACGAgGGCuugAACAACGg -3'
miRNA:   3'- -GUUGUUgUUGUUgUCGuugUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 10315 0.86 0.891337
Target:  5'- gCAGCAgugGCGGCGGCAGUGGCGGCGGCAg -3'
miRNA:   3'- -GUUGU---UGUUGUUGUCGUUGUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 10419 0.66 1
Target:  5'- -uGCAGCAGgGguguguguagaaGCAGUAGCggUAGCAu -3'
miRNA:   3'- guUGUUGUUgU------------UGUCGUUGuuGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 10494 0.66 1
Target:  5'- ------aAACGACGGCAACGuACAGCc -3'
miRNA:   3'- guuguugUUGUUGUCGUUGU-UGUUGu -5'
10327 3' -42.2 NC_002687.1 + 11316 1.02 0.26325
Target:  5'- uCAGCAGCAGCAGCAGUAGCGGCGGCAg -3'
miRNA:   3'- -GUUGUUGUUGUUGUCGUUGUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 11341 0.81 0.987529
Target:  5'- nAGCAGgAGCAGCgggugucggAGCAGCAGCAGCAg -3'
miRNA:   3'- gUUGUUgUUGUUG---------UCGUUGUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 11403 0.95 0.545107
Target:  5'- gCAGCAGCGguagcggugGCAGCAGCGGCAGCAGCAg -3'
miRNA:   3'- -GUUGUUGU---------UGUUGUCGUUGUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 11511 0.83 0.971672
Target:  5'- gCAGCGGCGGCuAUAGCAGCuGCGACAc -3'
miRNA:   3'- -GUUGUUGUUGuUGUCGUUGuUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 12030 0.85 0.923734
Target:  5'- gCAGCAGCAGCAAguGCAGaaaaaGACAGCAg -3'
miRNA:   3'- -GUUGUUGUUGUUguCGUUg----UUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 12182 0.86 0.917789
Target:  5'- gAGCAGCAGCGGCAGCGgaaGCggUAGCAg -3'
miRNA:   3'- gUUGUUGUUGUUGUCGU---UGuuGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 12226 0.71 1
Target:  5'- gUAACAGCGGCGGguGgCAGCAGUAACGu -3'
miRNA:   3'- -GUUGUUGUUGUUguC-GUUGUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 12408 0.79 0.997432
Target:  5'- aGACAGCAGCAuaacucaaagcuguuACAGCAAU-ACAACAg -3'
miRNA:   3'- gUUGUUGUUGU---------------UGUCGUUGuUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 12827 0.67 1
Target:  5'- aGGCAGaagguGCAaaACAGCAGCA-CAGCGu -3'
miRNA:   3'- gUUGUUgu---UGU--UGUCGUUGUuGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 13716 0.74 0.999983
Target:  5'- uCAGCAcacACAGCAggcACAGCAGugugUAGCAACAc -3'
miRNA:   3'- -GUUGU---UGUUGU---UGUCGUU----GUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 13977 0.72 0.999999
Target:  5'- uCAGCGcacACAGCAggcACAGCAGugugUAGCAACAc -3'
miRNA:   3'- -GUUGU---UGUUGU---UGUCGUU----GUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 14309 0.74 0.999983
Target:  5'- uCAGCAcacACAGCAggcACAGCAGugugUAGCAACAc -3'
miRNA:   3'- -GUUGU---UGUUGU---UGUCGUU----GUUGUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.