miRNA display CGI


Results 21 - 40 of 353 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10327 3' -42.2 NC_002687.1 + 14574 0.74 0.999983
Target:  5'- uCAGCAcacACAGCAggcACAGCAGugugUAGCAACAc -3'
miRNA:   3'- -GUUGU---UGUUGU---UGUCGUU----GUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 14836 0.72 0.999999
Target:  5'- uCAGCGcacACAGCAggcACAGCAGugugUAGCAACAc -3'
miRNA:   3'- -GUUGU---UGUUGU---UGUCGUU----GUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 15167 0.74 0.999983
Target:  5'- uCAGCAcacACAGCAggcACAGCAGugugUAGCAACAc -3'
miRNA:   3'- -GUUGU---UGUUGU---UGUCGUU----GUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 15433 0.74 0.999983
Target:  5'- uCAGCAcacACAGCAggcACAGCAGugugUAGCAACAc -3'
miRNA:   3'- -GUUGU---UGUUGU---UGUCGUU----GUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 15694 0.72 0.999999
Target:  5'- uCAGCGcacACAGCAggcACAGCAGugugUAGCAACAc -3'
miRNA:   3'- -GUUGU---UGUUGU---UGUCGUU----GUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 16025 0.74 0.999983
Target:  5'- uCAGCAcacACAGCAggcACAGCAGugugUAGCAACAc -3'
miRNA:   3'- -GUUGU---UGUUGU---UGUCGUU----GUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 16290 0.74 0.999983
Target:  5'- uCAGCAcacACAGCAggcACAGCAGugugUAGCAACAc -3'
miRNA:   3'- -GUUGU---UGUUGU---UGUCGUU----GUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 16621 0.81 0.989068
Target:  5'- uCAGCAcacACAGCAggcACAGCAguguGCAGCAACAc -3'
miRNA:   3'- -GUUGU---UGUUGU---UGUCGU----UGUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 17315 0.66 1
Target:  5'- aGGCAAUcaggugugauaGACGAUAGUuACGACAAUAc -3'
miRNA:   3'- gUUGUUG-----------UUGUUGUCGuUGUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 17430 0.67 1
Target:  5'- aAGCGuuGCAGCcGCAGCGGCuGCuuCAa -3'
miRNA:   3'- gUUGU--UGUUGuUGUCGUUGuUGuuGU- -5'
10327 3' -42.2 NC_002687.1 + 17619 0.73 0.999991
Target:  5'- -cACAAgAACAGCGGCAugGugGAUg -3'
miRNA:   3'- guUGUUgUUGUUGUCGUugUugUUGu -5'
10327 3' -42.2 NC_002687.1 + 17763 0.67 1
Target:  5'- aAGCGuuGCAGCcGCAGCGGCuGCuuCAa -3'
miRNA:   3'- gUUGU--UGUUGuUGUCGUUGuUGuuGU- -5'
10327 3' -42.2 NC_002687.1 + 17790 0.67 1
Target:  5'- aAGCAGCcGCuGCGGCuGCAACGcuugGCAu -3'
miRNA:   3'- gUUGUUGuUGuUGUCGuUGUUGU----UGU- -5'
10327 3' -42.2 NC_002687.1 + 18028 0.75 0.999898
Target:  5'- gGACGACugUggUAGCGACAGCGAUu -3'
miRNA:   3'- gUUGUUGuuGuuGUCGUUGUUGUUGu -5'
10327 3' -42.2 NC_002687.1 + 18064 0.89 0.798653
Target:  5'- gGACAACGACAGCgAGCcACAGCAACAc -3'
miRNA:   3'- gUUGUUGUUGUUG-UCGuUGUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 18123 0.67 1
Target:  5'- aAGCAGCcGCuGCGGCuGCAACGcuuaGCAu -3'
miRNA:   3'- gUUGUUGuUGuUGUCGuUGUUGU----UGU- -5'
10327 3' -42.2 NC_002687.1 + 18219 0.72 0.999999
Target:  5'- aCAGCAggACGACAccgucGCAGCAccggcgaaccccgugGCGGCAGCu -3'
miRNA:   3'- -GUUGU--UGUUGU-----UGUCGU---------------UGUUGUUGu -5'
10327 3' -42.2 NC_002687.1 + 18657 0.68 1
Target:  5'- gGGCAGgAGCAGgGGCAggaggggcaagagGCGGCGGCGu -3'
miRNA:   3'- gUUGUUgUUGUUgUCGU-------------UGUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 18907 0.66 1
Target:  5'- aAGCAugAugAGcCAGCccCAGCGACGc -3'
miRNA:   3'- gUUGUugUugUU-GUCGuuGUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 20482 0.77 0.999124
Target:  5'- cCAACAACGagagcacgaggcACAGCguauGGCGACGGCAACGu -3'
miRNA:   3'- -GUUGUUGU------------UGUUG----UCGUUGUUGUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.