miRNA display CGI


Results 41 - 60 of 353 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10327 3' -42.2 NC_002687.1 + 20512 0.9 0.76928
Target:  5'- aCAAUcACaAACAACAGCAGCAGCAACAg -3'
miRNA:   3'- -GUUGuUG-UUGUUGUCGUUGUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 23021 0.66 1
Target:  5'- uGACGGCAAaGACGGUGGCGAgguuCGGCGa -3'
miRNA:   3'- gUUGUUGUUgUUGUCGUUGUU----GUUGU- -5'
10327 3' -42.2 NC_002687.1 + 23673 0.69 1
Target:  5'- --cCAGCAGCAGaAGUAGCGGCAccuGCAc -3'
miRNA:   3'- guuGUUGUUGUUgUCGUUGUUGU---UGU- -5'
10327 3' -42.2 NC_002687.1 + 24538 0.66 1
Target:  5'- cCAGCGccccucAUGACGGCAGCGACGuuugcGCAAa- -3'
miRNA:   3'- -GUUGU------UGUUGUUGUCGUUGU-----UGUUgu -5'
10327 3' -42.2 NC_002687.1 + 25238 0.68 1
Target:  5'- aAGCAGC-ACGACGGCA-CAgacuuguuuacACGACAu -3'
miRNA:   3'- gUUGUUGuUGUUGUCGUuGU-----------UGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 25759 0.67 1
Target:  5'- aCAGuCAACAguACAACgAGCGACAG-AACAc -3'
miRNA:   3'- -GUU-GUUGU--UGUUG-UCGUUGUUgUUGU- -5'
10327 3' -42.2 NC_002687.1 + 25804 0.75 0.999898
Target:  5'- uCGACGACAACAcccucCGGC-GCAACGGCGu -3'
miRNA:   3'- -GUUGUUGUUGUu----GUCGuUGUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 27550 0.67 1
Target:  5'- uCAGCGACcgUGuCGGgGGCGACGACAu -3'
miRNA:   3'- -GUUGUUGuuGUuGUCgUUGUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 28667 0.74 0.999976
Target:  5'- gGACGACGugcuuGCAAUGGCAGCGAuCGACu -3'
miRNA:   3'- gUUGUUGU-----UGUUGUCGUUGUU-GUUGu -5'
10327 3' -42.2 NC_002687.1 + 29888 0.74 0.999956
Target:  5'- --cCAACAACGACGGCcuCGAUAACc -3'
miRNA:   3'- guuGUUGUUGUUGUCGuuGUUGUUGu -5'
10327 3' -42.2 NC_002687.1 + 30001 0.68 1
Target:  5'- cCAGCggUGACGauugGCGGCGGCGuguaaacaaaucguuGCAACAu -3'
miRNA:   3'- -GUUGuuGUUGU----UGUCGUUGU---------------UGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 31083 0.71 1
Target:  5'- uGAUAGCAAaGGCAGUAccgcacucaugGCAGCAGCAu -3'
miRNA:   3'- gUUGUUGUUgUUGUCGU-----------UGUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 31969 0.71 1
Target:  5'- aCAACAGCcACGcuauauucuuucgguACGGCAGCGACAcCGu -3'
miRNA:   3'- -GUUGUUGuUGU---------------UGUCGUUGUUGUuGU- -5'
10327 3' -42.2 NC_002687.1 + 37062 0.7 1
Target:  5'- uGugAGCAGCGugGGCGACcaaGACAc -3'
miRNA:   3'- gUugUUGUUGUugUCGUUGuugUUGU- -5'
10327 3' -42.2 NC_002687.1 + 38071 0.67 1
Target:  5'- aAGCAGCGACuuguggAGCAGCu-CAACcACAu -3'
miRNA:   3'- gUUGUUGUUG------UUGUCGuuGUUGuUGU- -5'
10327 3' -42.2 NC_002687.1 + 39419 0.69 1
Target:  5'- -uGCuuCAGCAGCucgcgGGCGACAugAGCGu -3'
miRNA:   3'- guUGuuGUUGUUG-----UCGUUGUugUUGU- -5'
10327 3' -42.2 NC_002687.1 + 41347 0.67 1
Target:  5'- gCAGgAACAGCugacuCAGCAGCu-CGACGc -3'
miRNA:   3'- -GUUgUUGUUGuu---GUCGUUGuuGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 41766 0.69 1
Target:  5'- cCAugGACGGCGuGCGGC-ACAcCAACAu -3'
miRNA:   3'- -GUugUUGUUGU-UGUCGuUGUuGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 42054 0.81 0.987529
Target:  5'- gCAACAGCGuacAUAGCAGCcugGACGACGGCAg -3'
miRNA:   3'- -GUUGUUGU---UGUUGUCG---UUGUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 45955 0.66 1
Target:  5'- gGAUuGCAGCuggugucGCAGUGACAugGACGa -3'
miRNA:   3'- gUUGuUGUUGu------UGUCGUUGUugUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.