miRNA display CGI


Results 81 - 100 of 353 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10327 3' -42.2 NC_002687.1 + 67627 0.69 1
Target:  5'- -uACGACAGCugAACAGaaaAACGugGACAa -3'
miRNA:   3'- guUGUUGUUG--UUGUCg--UUGUugUUGU- -5'
10327 3' -42.2 NC_002687.1 + 69293 0.73 0.999987
Target:  5'- uGACGAUGAUAACAGC-ACAACAucuagugGCAg -3'
miRNA:   3'- gUUGUUGUUGUUGUCGuUGUUGU-------UGU- -5'
10327 3' -42.2 NC_002687.1 + 69428 0.66 1
Target:  5'- aGACcGCAACAAUGGaucaGACAgACAGCGc -3'
miRNA:   3'- gUUGuUGUUGUUGUCg---UUGU-UGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 69515 0.69 1
Target:  5'- --uCAcCGACGuCGGCGACAACAAUg -3'
miRNA:   3'- guuGUuGUUGUuGUCGUUGUUGUUGu -5'
10327 3' -42.2 NC_002687.1 + 70414 0.71 1
Target:  5'- ---aGACAACGACGGUGcACGGCGAUAa -3'
miRNA:   3'- guugUUGUUGUUGUCGU-UGUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 70496 0.66 1
Target:  5'- -uACAGCGuguACGGCGACGACcuccGCAa -3'
miRNA:   3'- guUGUUGUuguUGUCGUUGUUGu---UGU- -5'
10327 3' -42.2 NC_002687.1 + 70712 0.75 0.999922
Target:  5'- -cACAACaAGCAugAGCAACAAgAGCu -3'
miRNA:   3'- guUGUUG-UUGUugUCGUUGUUgUUGu -5'
10327 3' -42.2 NC_002687.1 + 70893 0.67 1
Target:  5'- -cACGACGAUAuacuACAGUAAUgcuAGCAACGa -3'
miRNA:   3'- guUGUUGUUGU----UGUCGUUG---UUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 71017 0.66 1
Target:  5'- --uCGGCGACAcugguauauguugACGGUAGCGACAuCAa -3'
miRNA:   3'- guuGUUGUUGU-------------UGUCGUUGUUGUuGU- -5'
10327 3' -42.2 NC_002687.1 + 71456 0.67 1
Target:  5'- aGACGACGAguGCcgcuAGC-ACGACGGCGc -3'
miRNA:   3'- gUUGUUGUUguUG----UCGuUGUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 71800 0.77 0.99943
Target:  5'- gCGGCGAuCGACGACGGCGucuCGAUAGCGa -3'
miRNA:   3'- -GUUGUU-GUUGUUGUCGUu--GUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 72554 0.7 1
Target:  5'- uCGGCGGuguguCGGCGGCGGCGGCGuCGGCAc -3'
miRNA:   3'- -GUUGUU-----GUUGUUGUCGUUGUuGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 72621 0.68 1
Target:  5'- uCAGCGGCAACAuucAUGGCAagacaaACAAgAGCGa -3'
miRNA:   3'- -GUUGUUGUUGU---UGUCGU------UGUUgUUGU- -5'
10327 3' -42.2 NC_002687.1 + 73330 0.8 0.99468
Target:  5'- ---aGACggUGACGGCGACAGCAACGc -3'
miRNA:   3'- guugUUGuuGUUGUCGUUGUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 74256 0.7 1
Target:  5'- uGGCGACAgaACGACuAGCAACcauCGACGa -3'
miRNA:   3'- gUUGUUGU--UGUUG-UCGUUGuu-GUUGU- -5'
10327 3' -42.2 NC_002687.1 + 75641 0.74 0.999952
Target:  5'- aGACGACGACAcCAGUGACAcgucggaggaccaaACAGCGg -3'
miRNA:   3'- gUUGUUGUUGUuGUCGUUGU--------------UGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 75799 0.83 0.968569
Target:  5'- uCAACAACAGCGACA-UGACGACGACGc -3'
miRNA:   3'- -GUUGUUGUUGUUGUcGUUGUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 76624 0.71 1
Target:  5'- ---aGACggUGGCGGCGACGugGACGu -3'
miRNA:   3'- guugUUGuuGUUGUCGUUGUugUUGU- -5'
10327 3' -42.2 NC_002687.1 + 77667 0.68 1
Target:  5'- aGACgGACGAC-ACAGaCGACGGCAccGCAa -3'
miRNA:   3'- gUUG-UUGUUGuUGUC-GUUGUUGU--UGU- -5'
10327 3' -42.2 NC_002687.1 + 78125 0.71 1
Target:  5'- --uCGGCAACAGCGGUgguguuucggccguGGCGGCGGCGu -3'
miRNA:   3'- guuGUUGUUGUUGUCG--------------UUGUUGUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.