miRNA display CGI


Results 1 - 20 of 353 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10327 3' -42.2 NC_002687.1 + 332646 0.69 1
Target:  5'- uCAACAACAucGCuguCAGCGugAcCGACAa -3'
miRNA:   3'- -GUUGUUGU--UGuu-GUCGUugUuGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 332279 0.72 0.999999
Target:  5'- aAACAGCGGCucACAccauuGCGGCGGCGGCGc -3'
miRNA:   3'- gUUGUUGUUGu-UGU-----CGUUGUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 331647 0.71 1
Target:  5'- uCGAUGACGACAcCAGCucgGACAcCGACAg -3'
miRNA:   3'- -GUUGUUGUUGUuGUCG---UUGUuGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 331607 0.72 0.999999
Target:  5'- --cCAACAACAcACAGgAugAACAACGa -3'
miRNA:   3'- guuGUUGUUGU-UGUCgUugUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 331098 0.68 1
Target:  5'- aGACAGCugcuGCAAUcGgGGCAACAAUAu -3'
miRNA:   3'- gUUGUUGu---UGUUGuCgUUGUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 330976 0.67 1
Target:  5'- gUAGCGGCAcACAAgAGC-ACAACAccgaGCAg -3'
miRNA:   3'- -GUUGUUGU-UGUUgUCGuUGUUGU----UGU- -5'
10327 3' -42.2 NC_002687.1 + 330700 0.71 1
Target:  5'- cCAACAcACAGCAAgAGUAACAgaacugccgcgcACGACGc -3'
miRNA:   3'- -GUUGU-UGUUGUUgUCGUUGU------------UGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 330116 0.66 1
Target:  5'- -cGCAGCAGCGAUcguguucGCAcucguauACGACGGCAg -3'
miRNA:   3'- guUGUUGUUGUUGu------CGU-------UGUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 328513 0.77 0.998924
Target:  5'- gAAgAGCAGCGGCAGCGugACAAgAACAa -3'
miRNA:   3'- gUUgUUGUUGUUGUCGU--UGUUgUUGU- -5'
10327 3' -42.2 NC_002687.1 + 328105 0.73 0.999996
Target:  5'- aAGCGGCGACGACGGCuuCGcCAugGa -3'
miRNA:   3'- gUUGUUGUUGUUGUCGuuGUuGUugU- -5'
10327 3' -42.2 NC_002687.1 + 326645 0.74 0.999968
Target:  5'- -cACAACAcuauagaaaACAAUGGUGACAGCGGCAu -3'
miRNA:   3'- guUGUUGU---------UGUUGUCGUUGUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 326571 0.74 0.999976
Target:  5'- cCAACAaccacgugcACGACAACGGCGGCGugGGa- -3'
miRNA:   3'- -GUUGU---------UGUUGUUGUCGUUGUugUUgu -5'
10327 3' -42.2 NC_002687.1 + 326425 0.68 1
Target:  5'- ---gAGCAGaAACAGCGuuuACAACAACGa -3'
miRNA:   3'- guugUUGUUgUUGUCGU---UGUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 326198 0.7 1
Target:  5'- gAACGACAugGGagaAGCAcGCAugGACAu -3'
miRNA:   3'- gUUGUUGUugUUg--UCGU-UGUugUUGU- -5'
10327 3' -42.2 NC_002687.1 + 323333 0.99 0.370204
Target:  5'- gAugAACGGCAACAGCAGCAGCAGCAg -3'
miRNA:   3'- gUugUUGUUGUUGUCGUUGUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 323136 0.68 1
Target:  5'- uCAGCuACuACAGCAGUA--GACAACAc -3'
miRNA:   3'- -GUUGuUGuUGUUGUCGUugUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 322862 0.7 1
Target:  5'- gCAACGuuCGACAuCAGCaAGCGugGACAg -3'
miRNA:   3'- -GUUGUu-GUUGUuGUCG-UUGUugUUGU- -5'
10327 3' -42.2 NC_002687.1 + 322854 0.68 1
Target:  5'- uCGACGgaGCGACGGCugcGCGAuCGACGAUAc -3'
miRNA:   3'- -GUUGU--UGUUGUUGu--CGUU-GUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 318011 0.66 1
Target:  5'- gGACAugGACGACuGCAcCGAguGCc -3'
miRNA:   3'- gUUGUugUUGUUGuCGUuGUUguUGu -5'
10327 3' -42.2 NC_002687.1 + 316995 0.98 0.424325
Target:  5'- --gUAGCAGCAACAGCAACAACAACAa -3'
miRNA:   3'- guuGUUGUUGUUGUCGUUGUUGUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.