miRNA display CGI


Results 21 - 40 of 353 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10327 3' -42.2 NC_002687.1 + 316592 0.69 1
Target:  5'- -cGCAAUAcuuACAGCAGUAAUAuuuagugGCAACAg -3'
miRNA:   3'- guUGUUGU---UGUUGUCGUUGU-------UGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 316196 0.67 1
Target:  5'- -uGCGGCGggaucuucggguGCGGCGGCGGCAcccggcGCGGCGg -3'
miRNA:   3'- guUGUUGU------------UGUUGUCGUUGU------UGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 316142 0.7 1
Target:  5'- aAACAAacauACAGCGGgaAACAACGGCAa -3'
miRNA:   3'- gUUGUUgu--UGUUGUCg-UUGUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 312450 0.67 1
Target:  5'- gAACAGCAccACAcaguGCaAGCGGCGcucACAGCAc -3'
miRNA:   3'- gUUGUUGU--UGU----UG-UCGUUGU---UGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 312229 0.72 0.999999
Target:  5'- aCGACAACGGaAGCgAGCGGCGgaGCAGCGg -3'
miRNA:   3'- -GUUGUUGUUgUUG-UCGUUGU--UGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 310187 0.66 1
Target:  5'- -uACAGCGGCuACAGUAGCuAACAc-- -3'
miRNA:   3'- guUGUUGUUGuUGUCGUUG-UUGUugu -5'
10327 3' -42.2 NC_002687.1 + 309763 0.72 0.999999
Target:  5'- cCGACAACGGCGAaGGCGACAucucCGAUg -3'
miRNA:   3'- -GUUGUUGUUGUUgUCGUUGUu---GUUGu -5'
10327 3' -42.2 NC_002687.1 + 307805 0.84 0.957827
Target:  5'- aCGGCggUGACGGCGGUGACGGCAGCGa -3'
miRNA:   3'- -GUUGuuGUUGUUGUCGUUGUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 307715 0.74 0.999956
Target:  5'- cCGACAGCGAUgguGACGGCAuCAACGAa- -3'
miRNA:   3'- -GUUGUUGUUG---UUGUCGUuGUUGUUgu -5'
10327 3' -42.2 NC_002687.1 + 307647 0.67 1
Target:  5'- uCGGCGGCggUGGCGGUgguggugcuggcacgGGCGGCGGCGg -3'
miRNA:   3'- -GUUGUUGuuGUUGUCG---------------UUGUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 306497 0.67 1
Target:  5'- cCGACAACAACGAgaaGGCAuuuggACAccuguuggACGGCAa -3'
miRNA:   3'- -GUUGUUGUUGUUg--UCGU-----UGU--------UGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 303851 0.75 0.999948
Target:  5'- aCAGCAGCGggccuagcccccggaGCAACcguAGCuGCAGCAGCAg -3'
miRNA:   3'- -GUUGUUGU---------------UGUUG---UCGuUGUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 303208 0.77 0.999291
Target:  5'- cCAGCAgaaGCAACAcCAGCAGCAGCugUAg -3'
miRNA:   3'- -GUUGU---UGUUGUuGUCGUUGUUGuuGU- -5'
10327 3' -42.2 NC_002687.1 + 301701 0.7 1
Target:  5'- uCAACGACAGCcugGACccGGCgGACAugAACAa -3'
miRNA:   3'- -GUUGUUGUUG---UUG--UCG-UUGUugUUGU- -5'
10327 3' -42.2 NC_002687.1 + 301095 0.71 1
Target:  5'- uCGGCGGCAcAUGGCAGCAACuGCGAa- -3'
miRNA:   3'- -GUUGUUGU-UGUUGUCGUUGuUGUUgu -5'
10327 3' -42.2 NC_002687.1 + 299689 0.72 0.999999
Target:  5'- --cCAGCAguucucACAAUAGCAACAugAAUAa -3'
miRNA:   3'- guuGUUGU------UGUUGUCGUUGUugUUGU- -5'
10327 3' -42.2 NC_002687.1 + 299274 0.72 0.999999
Target:  5'- cCAGCGgcggGCGACGAgGGuCGACAACAugAu -3'
miRNA:   3'- -GUUGU----UGUUGUUgUC-GUUGUUGUugU- -5'
10327 3' -42.2 NC_002687.1 + 298420 0.67 1
Target:  5'- aAGCAcGCGcGCGGCGGCGGCcGCGGCc -3'
miRNA:   3'- gUUGU-UGU-UGUUGUCGUUGuUGUUGu -5'
10327 3' -42.2 NC_002687.1 + 298185 0.73 0.999991
Target:  5'- uCAugAACAACAACAuaAACAACAuCGu -3'
miRNA:   3'- -GUugUUGUUGUUGUcgUUGUUGUuGU- -5'
10327 3' -42.2 NC_002687.1 + 297869 0.73 0.999994
Target:  5'- uGGCuGCGGCgAACAGUAGCAACAGgAa -3'
miRNA:   3'- gUUGuUGUUG-UUGUCGUUGUUGUUgU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.