Results 1 - 20 of 353 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10327 | 3' | -42.2 | NC_002687.1 | + | 102587 | 1.12 | 0.089269 |
Target: 5'- aCAGCAACAGCAACAGCAGCAGCAACAa -3' miRNA: 3'- -GUUGUUGUUGUUGUCGUUGUUGUUGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 20512 | 0.9 | 0.76928 |
Target: 5'- aCAAUcACaAACAACAGCAGCAGCAACAg -3' miRNA: 3'- -GUUGuUG-UUGUUGUCGUUGUUGUUGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 102552 | 0.89 | 0.817402 |
Target: 5'- nAACAGCGAauuuuGCAGCAACAACAACAg -3' miRNA: 3'- gUUGUUGUUgu---UGUCGUUGUUGUUGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 277103 | 0.66 | 1 |
Target: 5'- gAACGACGACGGguGUGAUuaGACuGCAa -3' miRNA: 3'- gUUGUUGUUGUUguCGUUG--UUGuUGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 102766 | 1.05 | 0.187735 |
Target: 5'- aCGGCGACAGCGACGGCGACAGCGACAg -3' miRNA: 3'- -GUUGUUGUUGUUGUCGUUGUUGUUGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 11316 | 1.02 | 0.26325 |
Target: 5'- uCAGCAGCAGCAGCAGUAGCGGCGGCAg -3' miRNA: 3'- -GUUGUUGUUGUUGUCGUUGUUGUUGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 224455 | 0.96 | 0.482903 |
Target: 5'- uGGCGGCGGCAGCGGCAGCGGCAGCu -3' miRNA: 3'- gUUGUUGUUGUUGUCGUUGUUGUUGu -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 293526 | 0.96 | 0.503288 |
Target: 5'- cCAGCGguacauguACAGCAGCAGCGACAGCAGCAg -3' miRNA: 3'- -GUUGU--------UGUUGUUGUCGUUGUUGUUGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 208219 | 0.94 | 0.587985 |
Target: 5'- gCAGCAGCGACGauggaaGCAGCAGCGACGACGa -3' miRNA: 3'- -GUUGUUGUUGU------UGUCGUUGUUGUUGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 10051 | 0.9 | 0.748988 |
Target: 5'- gCAGCAGCAGCAGCAGUAGCAGuagUAGCAg -3' miRNA: 3'- -GUUGUUGUUGUUGUCGUUGUU---GUUGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 208513 | 0.93 | 0.631435 |
Target: 5'- gCAGCAGCGACGAUggaAGCAGCAGCGACGa -3' miRNA: 3'- -GUUGUUGUUGUUG---UCGUUGUUGUUGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 11403 | 0.95 | 0.545107 |
Target: 5'- gCAGCAGCGguagcggugGCAGCAGCGGCAGCAGCAg -3' miRNA: 3'- -GUUGUUGU---------UGUUGUCGUUGUUGUUGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 102527 | 1.11 | 0.097143 |
Target: 5'- gCAGCAACAACAACAGCAGCAACAGCAa -3' miRNA: 3'- -GUUGUUGUUGUUGUCGUUGUUGUUGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 283182 | 0.93 | 0.642322 |
Target: 5'- aAGCGGCAGCAACAGgGGCGGCAGCAc -3' miRNA: 3'- gUUGUUGUUGUUGUCgUUGUUGUUGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 208192 | 1.1 | 0.105669 |
Target: 5'- gCAGCAGCAGCAGCAGCAGCAGCGACAg -3' miRNA: 3'- -GUUGUUGUUGUUGUCGUUGUUGUUGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 208567 | 0.95 | 0.545107 |
Target: 5'- gCAGCAGCGACGauggaGCAGCAGCGACGACGa -3' miRNA: 3'- -GUUGUUGUUGU-----UGUCGUUGUUGUUGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 282945 | 0.91 | 0.69642 |
Target: 5'- uCAGCAGCAGCAggaACAGCAACAGCAgaaACAa -3' miRNA: 3'- -GUUGUUGUUGU---UGUCGUUGUUGU---UGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 18064 | 0.89 | 0.798653 |
Target: 5'- gGACAACGACAGCgAGCcACAGCAACAc -3' miRNA: 3'- gUUGUUGUUGUUG-UCGuUGUUGUUGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 102730 | 1.06 | 0.182795 |
Target: 5'- aCAGCGACAGCGACGGCGACAGCGACGg -3' miRNA: 3'- -GUUGUUGUUGUUGUCGUUGUUGUUGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 316995 | 0.98 | 0.424325 |
Target: 5'- --gUAGCAGCAACAGCAACAACAACAa -3' miRNA: 3'- guuGUUGUUGUUGUCGUUGUUGUUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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