miRNA display CGI


Results 21 - 40 of 353 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10327 3' -42.2 NC_002687.1 + 282054 0.86 0.911575
Target:  5'- uCAGCGGCGGCAggggccguagugGCAGCAGCGGCGGCu -3'
miRNA:   3'- -GUUGUUGUUGU------------UGUCGUUGUUGUUGu -5'
10327 3' -42.2 NC_002687.1 + 102552 0.89 0.817402
Target:  5'- nAACAGCGAauuuuGCAGCAACAACAACAg -3'
miRNA:   3'- gUUGUUGUUgu---UGUCGUUGUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 11403 0.95 0.545107
Target:  5'- gCAGCAGCGguagcggugGCAGCAGCGGCAGCAGCAg -3'
miRNA:   3'- -GUUGUUGU---------UGUUGUCGUUGUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 102730 1.06 0.182795
Target:  5'- aCAGCGACAGCGACGGCGACAGCGACGg -3'
miRNA:   3'- -GUUGUUGUUGUUGUCGUUGUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 11341 0.81 0.987529
Target:  5'- nAGCAGgAGCAGCgggugucggAGCAGCAGCAGCAg -3'
miRNA:   3'- gUUGUUgUUGUUG---------UCGUUGUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 223522 0.85 0.936897
Target:  5'- gCGACAGCAcuggugguggugaugGCAGCgaAGCAACAGCAGCAg -3'
miRNA:   3'- -GUUGUUGU---------------UGUUG--UCGUUGUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 20512 0.9 0.76928
Target:  5'- aCAAUcACaAACAACAGCAGCAGCAACAg -3'
miRNA:   3'- -GUUGuUG-UUGUUGUCGUUGUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 208192 1.1 0.105669
Target:  5'- gCAGCAGCAGCAGCAGCAGCAGCGACAg -3'
miRNA:   3'- -GUUGUUGUUGUUGUCGUUGUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 215305 0.86 0.917789
Target:  5'- uCGGCGACGGCGACAGUGACGGCcACGa -3'
miRNA:   3'- -GUUGUUGUUGUUGUCGUUGUUGuUGU- -5'
10327 3' -42.2 NC_002687.1 + 102527 1.11 0.097143
Target:  5'- gCAGCAACAACAACAGCAGCAACAGCAa -3'
miRNA:   3'- -GUUGUUGUUGUUGUCGUUGUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 18064 0.89 0.798653
Target:  5'- gGACAACGACAGCgAGCcACAGCAACAc -3'
miRNA:   3'- gUUGUUGUUGUUG-UCGuUGUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 91190 0.86 0.911575
Target:  5'- aGACAGCAACAuCAGCAGCGAguACAu -3'
miRNA:   3'- gUUGUUGUUGUuGUCGUUGUUguUGU- -5'
10327 3' -42.2 NC_002687.1 + 283182 0.93 0.642322
Target:  5'- aAGCGGCAGCAACAGgGGCGGCAGCAc -3'
miRNA:   3'- gUUGUUGUUGUUGUCgUUGUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 208219 0.94 0.587985
Target:  5'- gCAGCAGCGACGauggaaGCAGCAGCGACGACGa -3'
miRNA:   3'- -GUUGUUGUUGU------UGUCGUUGUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 224455 0.96 0.482903
Target:  5'- uGGCGGCGGCAGCGGCAGCGGCAGCu -3'
miRNA:   3'- gUUGUUGUUGUUGUCGUUGUUGUUGu -5'
10327 3' -42.2 NC_002687.1 + 102766 1.05 0.187735
Target:  5'- aCGGCGACAGCGACGGCGACAGCGACAg -3'
miRNA:   3'- -GUUGUUGUUGUUGUCGUUGUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 158793 0.79 0.995455
Target:  5'- cCGAUGugAugcACGGCGGCGACAACGACGg -3'
miRNA:   3'- -GUUGUugU---UGUUGUCGUUGUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 16621 0.81 0.989068
Target:  5'- uCAGCAcacACAGCAggcACAGCAguguGCAGCAACAc -3'
miRNA:   3'- -GUUGU---UGUUGU---UGUCGU----UGUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 11511 0.83 0.971672
Target:  5'- gCAGCGGCGGCuAUAGCAGCuGCGACAc -3'
miRNA:   3'- -GUUGUUGUUGuUGUCGUUGuUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 102440 0.84 0.94941
Target:  5'- cCAGCAGCAgauGCAGCAgagacaggcGCAGCAGCGGCAg -3'
miRNA:   3'- -GUUGUUGU---UGUUGU---------CGUUGUUGUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.