Results 41 - 60 of 353 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10327 | 3' | -42.2 | NC_002687.1 | + | 173293 | 0.81 | 0.985828 |
Target: 5'- cCAGCAGCcuCGAUAGCGcggGCGACAGCAg -3' miRNA: 3'- -GUUGUUGuuGUUGUCGU---UGUUGUUGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 20512 | 0.9 | 0.76928 |
Target: 5'- aCAAUcACaAACAACAGCAGCAGCAACAg -3' miRNA: 3'- -GUUGuUG-UUGUUGUCGUUGUUGUUGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 208192 | 1.1 | 0.105669 |
Target: 5'- gCAGCAGCAGCAGCAGCAGCAGCGACAg -3' miRNA: 3'- -GUUGUUGUUGUUGUCGUUGUUGUUGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 169872 | 0.81 | 0.983955 |
Target: 5'- uCAGCAACAAUGuCAGCAACAaugucaGCAACAa -3' miRNA: 3'- -GUUGUUGUUGUuGUCGUUGU------UGUUGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 102527 | 1.11 | 0.097143 |
Target: 5'- gCAGCAACAACAACAGCAGCAACAGCAa -3' miRNA: 3'- -GUUGUUGUUGUUGUCGUUGUUGUUGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 183014 | 0.76 | 0.999827 |
Target: 5'- aCAAUAGCcGCGACAGCAGcCAugGAUg -3' miRNA: 3'- -GUUGUUGuUGUUGUCGUU-GUugUUGu -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 102766 | 1.05 | 0.187735 |
Target: 5'- aCGGCGACAGCGACGGCGACAGCGACAg -3' miRNA: 3'- -GUUGUUGUUGUUGUCGUUGUUGUUGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 105904 | 0.76 | 0.999715 |
Target: 5'- aGACAuCAAgGACAGCcccuGCGGCAACAa -3' miRNA: 3'- gUUGUuGUUgUUGUCGu---UGUUGUUGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 71800 | 0.77 | 0.99943 |
Target: 5'- gCGGCGAuCGACGACGGCGucuCGAUAGCGa -3' miRNA: 3'- -GUUGUU-GUUGUUGUCGUu--GUUGUUGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 208681 | 0.77 | 0.999124 |
Target: 5'- gGACGACAcaggUAGCGGUGACGACGACGa -3' miRNA: 3'- gUUGUUGUu---GUUGUCGUUGUUGUUGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 215393 | 0.78 | 0.998077 |
Target: 5'- gCGugGACGucuggaaacaguGCGGCGGCGACGACGACu -3' miRNA: 3'- -GUugUUGU------------UGUUGUCGUUGUUGUUGu -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 158793 | 0.79 | 0.995455 |
Target: 5'- cCGAUGugAugcACGGCGGCGACAACGACGg -3' miRNA: 3'- -GUUGUugU---UGUUGUCGUUGUUGUUGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 16621 | 0.81 | 0.989068 |
Target: 5'- uCAGCAcacACAGCAggcACAGCAguguGCAGCAACAc -3' miRNA: 3'- -GUUGU---UGUUGU---UGUCGU----UGUUGUUGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 283894 | 0.84 | 0.95541 |
Target: 5'- gCAGCAGCAGCGGCuggggcuugugagccAGCAGCGGCGGCu -3' miRNA: 3'- -GUUGUUGUUGUUG---------------UCGUUGUUGUUGu -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 215305 | 0.86 | 0.917789 |
Target: 5'- uCGGCGACGGCGACAGUGACGGCcACGa -3' miRNA: 3'- -GUUGUUGUUGUUGUCGUUGUUGuUGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 282054 | 0.86 | 0.911575 |
Target: 5'- uCAGCGGCGGCAggggccguagugGCAGCAGCGGCGGCu -3' miRNA: 3'- -GUUGUUGUUGU------------UGUCGUUGUUGUUGu -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 102552 | 0.89 | 0.817402 |
Target: 5'- nAACAGCGAauuuuGCAGCAACAACAACAg -3' miRNA: 3'- gUUGUUGUUgu---UGUCGUUGUUGUUGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 283182 | 0.93 | 0.642322 |
Target: 5'- aAGCGGCAGCAACAGgGGCGGCAGCAc -3' miRNA: 3'- gUUGUUGUUGUUGUCgUUGUUGUUGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 208219 | 0.94 | 0.587985 |
Target: 5'- gCAGCAGCGACGauggaaGCAGCAGCGACGACGa -3' miRNA: 3'- -GUUGUUGUUGU------UGUCGUUGUUGUUGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 224455 | 0.96 | 0.482903 |
Target: 5'- uGGCGGCGGCAGCGGCAGCGGCAGCu -3' miRNA: 3'- gUUGUUGUUGUUGUCGUUGUUGUUGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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