miRNA display CGI


Results 61 - 80 of 353 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10327 3' -42.2 NC_002687.1 + 16621 0.81 0.989068
Target:  5'- uCAGCAcacACAGCAggcACAGCAguguGCAGCAACAc -3'
miRNA:   3'- -GUUGU---UGUUGU---UGUCGU----UGUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 282158 0.79 0.996729
Target:  5'- -uGCGGCGGCAGCGGCGggaguagggccuGCGGCGGCGg -3'
miRNA:   3'- guUGUUGUUGUUGUCGU------------UGUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 11316 1.02 0.26325
Target:  5'- uCAGCAGCAGCAGCAGUAGCGGCGGCAg -3'
miRNA:   3'- -GUUGUUGUUGUUGUCGUUGUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 293526 0.96 0.503288
Target:  5'- cCAGCGguacauguACAGCAGCAGCGACAGCAGCAg -3'
miRNA:   3'- -GUUGU--------UGUUGUUGUCGUUGUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 208366 0.94 0.587985
Target:  5'- gCAGCAGCGACGauggaaGCAGCAGCGACGACGa -3'
miRNA:   3'- -GUUGUUGUUGU------UGUCGUUGUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 282945 0.91 0.69642
Target:  5'- uCAGCAGCAGCAggaACAGCAACAGCAgaaACAa -3'
miRNA:   3'- -GUUGUUGUUGU---UGUCGUUGUUGU---UGU- -5'
10327 3' -42.2 NC_002687.1 + 10315 0.86 0.891337
Target:  5'- gCAGCAgugGCGGCGGCAGUGGCGGCGGCAg -3'
miRNA:   3'- -GUUGU---UGUUGUUGUCGUUGUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 91190 0.86 0.911575
Target:  5'- aGACAGCAACAuCAGCAGCGAguACAu -3'
miRNA:   3'- gUUGUUGUUGUuGUCGUUGUUguUGU- -5'
10327 3' -42.2 NC_002687.1 + 223522 0.85 0.936897
Target:  5'- gCGACAGCAcuggugguggugaugGCAGCgaAGCAACAGCAGCAg -3'
miRNA:   3'- -GUUGUUGU---------------UGUUG--UCGUUGUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 75799 0.83 0.968569
Target:  5'- uCAACAACAGCGACA-UGACGACGACGc -3'
miRNA:   3'- -GUUGUUGUUGUUGUcGUUGUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 15167 0.74 0.999983
Target:  5'- uCAGCAcacACAGCAggcACAGCAGugugUAGCAACAc -3'
miRNA:   3'- -GUUGU---UGUUGU---UGUCGUU----GUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 13716 0.74 0.999983
Target:  5'- uCAGCAcacACAGCAggcACAGCAGugugUAGCAACAc -3'
miRNA:   3'- -GUUGU---UGUUGU---UGUCGUU----GUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 328513 0.77 0.998924
Target:  5'- gAAgAGCAGCGGCAGCGugACAAgAACAa -3'
miRNA:   3'- gUUgUUGUUGUUGUCGU--UGUUgUUGU- -5'
10327 3' -42.2 NC_002687.1 + 148025 0.77 0.999291
Target:  5'- cCAACGGCAuagccauCAACGGCAuagccaucaACGACGACAu -3'
miRNA:   3'- -GUUGUUGUu------GUUGUCGU---------UGUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 105904 0.76 0.999715
Target:  5'- aGACAuCAAgGACAGCcccuGCGGCAACAa -3'
miRNA:   3'- gUUGUuGUUgUUGUCGu---UGUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 183014 0.76 0.999827
Target:  5'- aCAAUAGCcGCGACAGCAGcCAugGAUg -3'
miRNA:   3'- -GUUGUUGuUGUUGUCGUU-GUugUUGu -5'
10327 3' -42.2 NC_002687.1 + 226111 0.75 0.999866
Target:  5'- aCAACGGgGAUggUAGUGACAGCGACc -3'
miRNA:   3'- -GUUGUUgUUGuuGUCGUUGUUGUUGu -5'
10327 3' -42.2 NC_002687.1 + 25804 0.75 0.999898
Target:  5'- uCGACGACAACAcccucCGGC-GCAACGGCGu -3'
miRNA:   3'- -GUUGUUGUUGUu----GUCGuUGUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 303851 0.75 0.999948
Target:  5'- aCAGCAGCGggccuagcccccggaGCAACcguAGCuGCAGCAGCAg -3'
miRNA:   3'- -GUUGUUGU---------------UGUUG---UCGuUGUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 215274 0.74 0.999956
Target:  5'- -cACGGCGAUAGgcuCGGCGACGGCGAUAg -3'
miRNA:   3'- guUGUUGUUGUU---GUCGUUGUUGUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.