Results 81 - 100 of 353 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10327 | 3' | -42.2 | NC_002687.1 | + | 208753 | 0.77 | 0.999124 |
Target: 5'- gGACGACAcgggUAGCGGUGACGACGACGa -3' miRNA: 3'- gUUGUUGUu---GUUGUCGUUGUUGUUGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 208825 | 0.77 | 0.99943 |
Target: 5'- uGACGACcguGACGACGGUggugccGACAACGACAa -3' miRNA: 3'- gUUGUUG---UUGUUGUCG------UUGUUGUUGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 208250 | 0.76 | 0.999827 |
Target: 5'- nGAUGGaAGCAGCAGUGACGACGACGg -3' miRNA: 3'- gUUGUUgUUGUUGUCGUUGUUGUUGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 225739 | 0.75 | 0.999866 |
Target: 5'- aCAACGGgGAUggUAGUGACAGCGACc -3' miRNA: 3'- -GUUGUUgUUGuuGUCGUUGUUGUUGu -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 226297 | 0.75 | 0.999866 |
Target: 5'- aCAACGGgGAUggUAGUGACAGCGACc -3' miRNA: 3'- -GUUGUUgUUGuuGUCGUUGUUGUUGu -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 303851 | 0.75 | 0.999948 |
Target: 5'- aCAGCAGCGggccuagcccccggaGCAACcguAGCuGCAGCAGCAg -3' miRNA: 3'- -GUUGUUGU---------------UGUUG---UCGuUGUUGUUGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 215274 | 0.74 | 0.999956 |
Target: 5'- -cACGGCGAUAGgcuCGGCGACGGCGAUAg -3' miRNA: 3'- guUGUUGUUGUU---GUCGUUGUUGUUGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 75799 | 0.83 | 0.968569 |
Target: 5'- uCAACAACAGCGACA-UGACGACGACGc -3' miRNA: 3'- -GUUGUUGUUGUUGUcGUUGUUGUUGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 223522 | 0.85 | 0.936897 |
Target: 5'- gCGACAGCAcuggugguggugaugGCAGCgaAGCAACAGCAGCAg -3' miRNA: 3'- -GUUGUUGU---------------UGUUG--UCGUUGUUGUUGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 91190 | 0.86 | 0.911575 |
Target: 5'- aGACAGCAACAuCAGCAGCGAguACAu -3' miRNA: 3'- gUUGUUGUUGUuGUCGUUGUUguUGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 167285 | 0.73 | 0.999988 |
Target: 5'- aAACAGCGACAGCuGGUcgGAgAACGACAu -3' miRNA: 3'- gUUGUUGUUGUUG-UCG--UUgUUGUUGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 297869 | 0.73 | 0.999994 |
Target: 5'- uGGCuGCGGCgAACAGUAGCAACAGgAa -3' miRNA: 3'- gUUGuUGUUG-UUGUCGUUGUUGUUgU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 13977 | 0.72 | 0.999999 |
Target: 5'- uCAGCGcacACAGCAggcACAGCAGugugUAGCAACAc -3' miRNA: 3'- -GUUGU---UGUUGU---UGUCGUU----GUUGUUGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 84363 | 0.72 | 0.999999 |
Target: 5'- uCAACGucGCGACGACGGUGACGgAUAACc -3' miRNA: 3'- -GUUGU--UGUUGUUGUCGUUGU-UGUUGu -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 113721 | 0.72 | 0.999999 |
Target: 5'- -cACGACGGCGACcGCGauuaccgcugccGCAGCGACGc -3' miRNA: 3'- guUGUUGUUGUUGuCGU------------UGUUGUUGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 11316 | 1.02 | 0.26325 |
Target: 5'- uCAGCAGCAGCAGCAGUAGCGGCGGCAg -3' miRNA: 3'- -GUUGUUGUUGUUGUCGUUGUUGUUGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 293526 | 0.96 | 0.503288 |
Target: 5'- cCAGCGguacauguACAGCAGCAGCGACAGCAGCAg -3' miRNA: 3'- -GUUGU--------UGUUGUUGUCGUUGUUGUUGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 208366 | 0.94 | 0.587985 |
Target: 5'- gCAGCAGCGACGauggaaGCAGCAGCGACGACGa -3' miRNA: 3'- -GUUGUUGUUGU------UGUCGUUGUUGUUGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 282945 | 0.91 | 0.69642 |
Target: 5'- uCAGCAGCAGCAggaACAGCAACAGCAgaaACAa -3' miRNA: 3'- -GUUGUUGUUGU---UGUCGUUGUUGU---UGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 10315 | 0.86 | 0.891337 |
Target: 5'- gCAGCAgugGCGGCGGCAGUGGCGGCGGCAg -3' miRNA: 3'- -GUUGU---UGUUGUUGUCGUUGUUGUUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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