Results 101 - 120 of 353 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10327 | 3' | -42.2 | NC_002687.1 | + | 15694 | 0.72 | 0.999999 |
Target: 5'- uCAGCGcacACAGCAggcACAGCAGugugUAGCAACAc -3' miRNA: 3'- -GUUGU---UGUUGU---UGUCGUU----GUUGUUGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 226896 | 0.72 | 0.999999 |
Target: 5'- uCAACAACAGCAAgGGUAAacgccCGGCAa -3' miRNA: 3'- -GUUGUUGUUGUUgUCGUUguu--GUUGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 65202 | 0.72 | 0.999999 |
Target: 5'- gGACAcCGGCGACGGC-ACGGCAuCAu -3' miRNA: 3'- gUUGUuGUUGUUGUCGuUGUUGUuGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 130514 | 0.71 | 1 |
Target: 5'- aGACgAACAAgAGCAGCAcgaaaGACAGCAa -3' miRNA: 3'- gUUG-UUGUUgUUGUCGUug---UUGUUGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 226755 | 0.71 | 1 |
Target: 5'- --uCGGCAGCGGCGGUggUggUAGCGg -3' miRNA: 3'- guuGUUGUUGUUGUCGuuGuuGUUGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 225739 | 0.75 | 0.999866 |
Target: 5'- aCAACGGgGAUggUAGUGACAGCGACc -3' miRNA: 3'- -GUUGUUgUUGuuGUCGUUGUUGUUGu -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 208250 | 0.76 | 0.999827 |
Target: 5'- nGAUGGaAGCAGCAGUGACGACGACGg -3' miRNA: 3'- gUUGUUgUUGUUGUCGUUGUUGUUGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 11316 | 1.02 | 0.26325 |
Target: 5'- uCAGCAGCAGCAGCAGUAGCGGCGGCAg -3' miRNA: 3'- -GUUGUUGUUGUUGUCGUUGUUGUUGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 293526 | 0.96 | 0.503288 |
Target: 5'- cCAGCGguacauguACAGCAGCAGCGACAGCAGCAg -3' miRNA: 3'- -GUUGU--------UGUUGUUGUCGUUGUUGUUGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 208366 | 0.94 | 0.587985 |
Target: 5'- gCAGCAGCGACGauggaaGCAGCAGCGACGACGa -3' miRNA: 3'- -GUUGUUGUUGU------UGUCGUUGUUGUUGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 282945 | 0.91 | 0.69642 |
Target: 5'- uCAGCAGCAGCAggaACAGCAACAGCAgaaACAa -3' miRNA: 3'- -GUUGUUGUUGU---UGUCGUUGUUGU---UGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 10315 | 0.86 | 0.891337 |
Target: 5'- gCAGCAgugGCGGCGGCAGUGGCGGCGGCAg -3' miRNA: 3'- -GUUGU---UGUUGUUGUCGUUGUUGUUGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 91190 | 0.86 | 0.911575 |
Target: 5'- aGACAGCAACAuCAGCAGCGAguACAu -3' miRNA: 3'- gUUGUUGUUGUuGUCGUUGUUguUGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 223522 | 0.85 | 0.936897 |
Target: 5'- gCGACAGCAcuggugguggugaugGCAGCgaAGCAACAGCAGCAg -3' miRNA: 3'- -GUUGUUGU---------------UGUUG--UCGUUGUUGUUGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 75799 | 0.83 | 0.968569 |
Target: 5'- uCAACAACAGCGACA-UGACGACGACGc -3' miRNA: 3'- -GUUGUUGUUGUUGUcGUUGUUGUUGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 284350 | 0.8 | 0.9917 |
Target: 5'- aAGCGGCAACAuucGCAGUGACAGCAcCAg -3' miRNA: 3'- gUUGUUGUUGU---UGUCGUUGUUGUuGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 290822 | 0.79 | 0.996135 |
Target: 5'- gGACGuauCAGCGGCGGCAAuuCAGCGGCAa -3' miRNA: 3'- gUUGUu--GUUGUUGUCGUU--GUUGUUGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 173128 | 0.78 | 0.998077 |
Target: 5'- gAGCAACAAagggaAACGGCAGCAcaagaaGCAACAc -3' miRNA: 3'- gUUGUUGUUg----UUGUCGUUGU------UGUUGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 208753 | 0.77 | 0.999124 |
Target: 5'- gGACGACAcgggUAGCGGUGACGACGACGa -3' miRNA: 3'- gUUGUUGUu---GUUGUCGUUGUUGUUGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 208825 | 0.77 | 0.99943 |
Target: 5'- uGACGACcguGACGACGGUggugccGACAACGACAa -3' miRNA: 3'- gUUGUUG---UUGUUGUCG------UUGUUGUUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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