Results 41 - 60 of 353 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10327 | 3' | -42.2 | NC_002687.1 | + | 130394 | 0.66 | 1 |
Target: 5'- gGAUcuCGAC-GCAGCAuacaaaACAACAACGa -3' miRNA: 3'- gUUGuuGUUGuUGUCGU------UGUUGUUGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 330116 | 0.66 | 1 |
Target: 5'- -cGCAGCAGCGAUcguguucGCAcucguauACGACGGCAg -3' miRNA: 3'- guUGUUGUUGUUGu------CGU-------UGUUGUUGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 18907 | 0.66 | 1 |
Target: 5'- aAGCAugAugAGcCAGCccCAGCGACGc -3' miRNA: 3'- gUUGUugUugUU-GUCGuuGUUGUUGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 17315 | 0.66 | 1 |
Target: 5'- aGGCAAUcaggugugauaGACGAUAGUuACGACAAUAc -3' miRNA: 3'- gUUGUUG-----------UUGUUGUCGuUGUUGUUGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 6249 | 0.66 | 1 |
Target: 5'- aCAACAugAACGACAaauGguAUuuCAGCAu -3' miRNA: 3'- -GUUGUugUUGUUGU---CguUGuuGUUGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 164356 | 0.66 | 1 |
Target: 5'- cCGACGACGACcucGACAcCGACGaagaugGCGACAc -3' miRNA: 3'- -GUUGUUGUUG---UUGUcGUUGU------UGUUGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 270327 | 0.66 | 1 |
Target: 5'- -uACuGCAACAACGGUGACAuGCGuGCAu -3' miRNA: 3'- guUGuUGUUGUUGUCGUUGU-UGU-UGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 224633 | 0.67 | 1 |
Target: 5'- uCAGCAuCGGCAuCGGCAuCGGCAucgGCAg -3' miRNA: 3'- -GUUGUuGUUGUuGUCGUuGUUGU---UGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 182422 | 0.67 | 1 |
Target: 5'- --cCGAgGACAugGGCAACGcucggGCAACc -3' miRNA: 3'- guuGUUgUUGUugUCGUUGU-----UGUUGu -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 312450 | 0.67 | 1 |
Target: 5'- gAACAGCAccACAcaguGCaAGCGGCGcucACAGCAc -3' miRNA: 3'- gUUGUUGU--UGU----UG-UCGUUGU---UGUUGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 41347 | 0.67 | 1 |
Target: 5'- gCAGgAACAGCugacuCAGCAGCu-CGACGc -3' miRNA: 3'- -GUUgUUGUUGuu---GUCGUUGuuGUUGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 238227 | 0.67 | 1 |
Target: 5'- uCAGCGcCGACGcCGGCAACGugAAa- -3' miRNA: 3'- -GUUGUuGUUGUuGUCGUUGUugUUgu -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 159185 | 0.67 | 1 |
Target: 5'- gGGCuuuCGAC--CGGCGGCGACGGCGg -3' miRNA: 3'- gUUGuu-GUUGuuGUCGUUGUUGUUGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 307647 | 0.67 | 1 |
Target: 5'- uCGGCGGCggUGGCGGUgguggugcuggcacgGGCGGCGGCGg -3' miRNA: 3'- -GUUGUUGuuGUUGUCG---------------UUGUUGUUGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 118238 | 0.67 | 1 |
Target: 5'- gAACGAgGACGACGGUgcagcgccugcgucgAACGAgGACGa -3' miRNA: 3'- gUUGUUgUUGUUGUCG---------------UUGUUgUUGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 118178 | 0.67 | 1 |
Target: 5'- gAACGAgGACGACGGUgccgcgccugcgucgAACGAgGACGa -3' miRNA: 3'- gUUGUUgUUGUUGUCG---------------UUGUUgUUGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 150074 | 0.66 | 1 |
Target: 5'- gAGCAACAcuuCGAUAGUGgaaauuguugcacACAACAACGa -3' miRNA: 3'- gUUGUUGUu--GUUGUCGU-------------UGUUGUUGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 207098 | 0.66 | 1 |
Target: 5'- ----uGCGGguACAGCAccuccACAGCAACAa -3' miRNA: 3'- guuguUGUUguUGUCGU-----UGUUGUUGU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 165592 | 0.66 | 1 |
Target: 5'- gUAAUAACAGCuACuGCGACAGuCGugAa -3' miRNA: 3'- -GUUGUUGUUGuUGuCGUUGUU-GUugU- -5' |
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10327 | 3' | -42.2 | NC_002687.1 | + | 310187 | 0.66 | 1 |
Target: 5'- -uACAGCGGCuACAGUAGCuAACAc-- -3' miRNA: 3'- guUGUUGUUGuUGUCGUUG-UUGUugu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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