miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10327 5' -59.5 NC_002687.1 + 302466 0.66 0.944184
Target:  5'- cGGUGa-ACCGCuUGACGC---GCCGGCa -3'
miRNA:   3'- -CCACagUGGCG-GCUGUGccaCGGCCG- -5'
10327 5' -59.5 NC_002687.1 + 19502 0.66 0.944184
Target:  5'- cGUGaUguCCGCUGACcCGG-GCCaGGCc -3'
miRNA:   3'- cCAC-AguGGCGGCUGuGCCaCGG-CCG- -5'
10327 5' -59.5 NC_002687.1 + 195337 0.66 0.944184
Target:  5'- cGUGaUguCCGCUGACcCGG-GCCaGGCc -3'
miRNA:   3'- cCAC-AguGGCGGCUGuGCCaCGG-CCG- -5'
10327 5' -59.5 NC_002687.1 + 220928 0.66 0.944184
Target:  5'- cGUGaUguCCGCUGACcCGG-GCCaGGCc -3'
miRNA:   3'- cCAC-AguGGCGGCUGuGCCaCGG-CCG- -5'
10327 5' -59.5 NC_002687.1 + 123658 0.66 0.939988
Target:  5'- --cGUCguaACCGCCGAUcgucuCGuagGCCGGCu -3'
miRNA:   3'- ccaCAG---UGGCGGCUGu----GCca-CGGCCG- -5'
10327 5' -59.5 NC_002687.1 + 76443 0.66 0.939558
Target:  5'- cGUGUCACacacgacacaGCgGAaACGGUcgucauucuggucGCCGGCg -3'
miRNA:   3'- cCACAGUGg---------CGgCUgUGCCA-------------CGGCCG- -5'
10327 5' -59.5 NC_002687.1 + 80686 0.66 0.938691
Target:  5'- aGGUagcGUCGCUGaacuCCGACcgagucauguacguGcCGGUGUCGGCa -3'
miRNA:   3'- -CCA---CAGUGGC----GGCUG--------------U-GCCACGGCCG- -5'
10327 5' -59.5 NC_002687.1 + 204175 0.66 0.935144
Target:  5'- cGG-GUCGCauaucagCGCgGGgGCGGUGCCGaacaGCa -3'
miRNA:   3'- -CCaCAGUG-------GCGgCUgUGCCACGGC----CG- -5'
10327 5' -59.5 NC_002687.1 + 69045 0.66 0.931001
Target:  5'- uGGUG--GCgGCgGugGCGGUgguGUCGGCg -3'
miRNA:   3'- -CCACagUGgCGgCugUGCCA---CGGCCG- -5'
10327 5' -59.5 NC_002687.1 + 224176 0.66 0.931001
Target:  5'- cGGUGgcgggggCAgUGCUgGugGCGGUGgCGGUg -3'
miRNA:   3'- -CCACa------GUgGCGG-CugUGCCACgGCCG- -5'
10327 5' -59.5 NC_002687.1 + 214528 0.66 0.931001
Target:  5'- aGGUGUUuCCGCCGuACAggaaagaGGcGgCGGCg -3'
miRNA:   3'- -CCACAGuGGCGGC-UGUg------CCaCgGCCG- -5'
10327 5' -59.5 NC_002687.1 + 295149 0.66 0.931001
Target:  5'- uGGcGUC-CUGCagcACACGGcGCCGGUg -3'
miRNA:   3'- -CCaCAGuGGCGgc-UGUGCCaCGGCCG- -5'
10327 5' -59.5 NC_002687.1 + 217900 0.66 0.931001
Target:  5'- aGUGUCACCGgaGGCgaaaACGuGUGUgGGUg -3'
miRNA:   3'- cCACAGUGGCggCUG----UGC-CACGgCCG- -5'
10327 5' -59.5 NC_002687.1 + 97782 0.66 0.931001
Target:  5'- -cUGgCACCGCUGGCACc--GCUGGCc -3'
miRNA:   3'- ccACaGUGGCGGCUGUGccaCGGCCG- -5'
10327 5' -59.5 NC_002687.1 + 76753 0.66 0.931001
Target:  5'- gGGUGUCccgaggGCC-CCGACggaggagaACGGUGCCa-- -3'
miRNA:   3'- -CCACAG------UGGcGGCUG--------UGCCACGGccg -5'
10327 5' -59.5 NC_002687.1 + 76975 0.66 0.931001
Target:  5'- --cGUCGCCGCCaccgucuaGCACGaG-GCaCGGCa -3'
miRNA:   3'- ccaCAGUGGCGGc-------UGUGC-CaCG-GCCG- -5'
10327 5' -59.5 NC_002687.1 + 200089 0.66 0.930531
Target:  5'- --aGcCGCaaagGUCGACAugcucguUGGUGCCGGCg -3'
miRNA:   3'- ccaCaGUGg---CGGCUGU-------GCCACGGCCG- -5'
10327 5' -59.5 NC_002687.1 + 59040 0.66 0.926208
Target:  5'- aGGcca-GCCGCCGACACGacgaUGUCGaGCg -3'
miRNA:   3'- -CCacagUGGCGGCUGUGCc---ACGGC-CG- -5'
10327 5' -59.5 NC_002687.1 + 127853 0.66 0.926208
Target:  5'- uGGUGUCugCGaCGACGa--UGUCGGUg -3'
miRNA:   3'- -CCACAGugGCgGCUGUgccACGGCCG- -5'
10327 5' -59.5 NC_002687.1 + 330943 0.66 0.926208
Target:  5'- cGUGa-AUCGCC-ACgACGGcUGCCGGCa -3'
miRNA:   3'- cCACagUGGCGGcUG-UGCC-ACGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.