miRNA display CGI


Results 61 - 80 of 84 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10327 5' -59.5 NC_002687.1 + 78112 0.69 0.815738
Target:  5'- uGGUGUUuCgGCCGugGCGGcgGCgucugaaaCGGCa -3'
miRNA:   3'- -CCACAGuGgCGGCugUGCCa-CG--------GCCG- -5'
10327 5' -59.5 NC_002687.1 + 279662 0.7 0.751933
Target:  5'- --cGUCAggguCCGCUGACucuucuggugggccgGUGGUGCCGGCa -3'
miRNA:   3'- ccaCAGU----GGCGGCUG---------------UGCCACGGCCG- -5'
10327 5' -59.5 NC_002687.1 + 72924 0.7 0.774487
Target:  5'- cGUGUgccgacgccgcCGCCGCCGACACaccGCCGaGCa -3'
miRNA:   3'- cCACA-----------GUGGCGGCUGUGccaCGGC-CG- -5'
10327 5' -59.5 NC_002687.1 + 97624 0.7 0.765891
Target:  5'- aGUGaUgACgUGCCGGCACcGUGUCGGCg -3'
miRNA:   3'- cCAC-AgUG-GCGGCUGUGcCACGGCCG- -5'
10327 5' -59.5 NC_002687.1 + 281942 0.7 0.791354
Target:  5'- --gGUCGCgGCaggagcaGGgGCGGUGCCGGg -3'
miRNA:   3'- ccaCAGUGgCGg------CUgUGCCACGGCCg -5'
10327 5' -59.5 NC_002687.1 + 239838 0.71 0.694133
Target:  5'- --gGUCcgGCCGCCGcgGCGGaUGCUGGCa -3'
miRNA:   3'- ccaCAG--UGGCGGCugUGCC-ACGGCCG- -5'
10327 5' -59.5 NC_002687.1 + 226933 0.71 0.739534
Target:  5'- gGGcGUCGCCccGUCGGCuccguCGGcUGCCGGUg -3'
miRNA:   3'- -CCaCAGUGG--CGGCUGu----GCC-ACGGCCG- -5'
10327 5' -59.5 NC_002687.1 + 83375 0.71 0.71156
Target:  5'- gGGUGUCGCCGaCGACACcGUcggaaccuacaccGUCGGUg -3'
miRNA:   3'- -CCACAGUGGCgGCUGUGcCA-------------CGGCCG- -5'
10327 5' -59.5 NC_002687.1 + 23710 0.71 0.730582
Target:  5'- ---cUCACCGCCGACGCcccuCCGGCa -3'
miRNA:   3'- ccacAGUGGCGGCUGUGccacGGCCG- -5'
10327 5' -59.5 NC_002687.1 + 133855 0.71 0.694133
Target:  5'- cGGUGUCAaaGaCGACGCuGUGCgCGGUa -3'
miRNA:   3'- -CCACAGUggCgGCUGUGcCACG-GCCG- -5'
10327 5' -59.5 NC_002687.1 + 118196 0.71 0.729683
Target:  5'- cGGUG-CAgCGCCugcgucgaacgagGACgACGGUGCCGcGCc -3'
miRNA:   3'- -CCACaGUgGCGG-------------CUG-UGCCACGGC-CG- -5'
10327 5' -59.5 NC_002687.1 + 65042 0.72 0.647646
Target:  5'- ----aCAUgGCCGACGCGGUGCUaGGUg -3'
miRNA:   3'- ccacaGUGgCGGCUGUGCCACGG-CCG- -5'
10327 5' -59.5 NC_002687.1 + 182376 0.72 0.684895
Target:  5'- --cGUCAUCGCCGAUA-GGUGuuGcGCg -3'
miRNA:   3'- ccaCAGUGGCGGCUGUgCCACggC-CG- -5'
10327 5' -59.5 NC_002687.1 + 83678 0.72 0.647646
Target:  5'- cGGUGUCGCUaGCCGACG-GGaUGCCGu- -3'
miRNA:   3'- -CCACAGUGG-CGGCUGUgCC-ACGGCcg -5'
10327 5' -59.5 NC_002687.1 + 209449 0.72 0.65699
Target:  5'- cGGaGUCAgaGuCCGACGaaGUGCCGGCg -3'
miRNA:   3'- -CCaCAGUggC-GGCUGUgcCACGGCCG- -5'
10327 5' -59.5 NC_002687.1 + 61178 0.72 0.675621
Target:  5'- -cUGUCGCCGCuCGACGaGGgacUGCCGaGCg -3'
miRNA:   3'- ccACAGUGGCG-GCUGUgCC---ACGGC-CG- -5'
10327 5' -59.5 NC_002687.1 + 307628 0.73 0.619578
Target:  5'- uGGUGcuggCACgGgCGGCgGCGGUGCUGGUg -3'
miRNA:   3'- -CCACa---GUGgCgGCUG-UGCCACGGCCG- -5'
10327 5' -59.5 NC_002687.1 + 155142 0.74 0.545478
Target:  5'- uGGcGUaCGCCGaCGACGCGGUGUcuaCGGCg -3'
miRNA:   3'- -CCaCA-GUGGCgGCUGUGCCACG---GCCG- -5'
10327 5' -59.5 NC_002687.1 + 226789 0.75 0.483092
Target:  5'- uGGUGcCGgUGCCGguGC-CGGUGCCGGUg -3'
miRNA:   3'- -CCACaGUgGCGGC--UGuGCCACGGCCG- -5'
10327 5' -59.5 NC_002687.1 + 212344 0.75 0.518367
Target:  5'- cGGgcucGcCACCGUCGACAgCGGUGgUGGCa -3'
miRNA:   3'- -CCa---CaGUGGCGGCUGU-GCCACgGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.