Results 41 - 60 of 84 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10327 | 5' | -59.5 | NC_002687.1 | + | 215347 | 0.68 | 0.880752 |
Target: 5'- -aUGUCGCCGCCcu--CGGccccGCCGGUg -3' miRNA: 3'- ccACAGUGGCGGcuguGCCa---CGGCCG- -5' |
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10327 | 5' | -59.5 | NC_002687.1 | + | 18616 | 0.68 | 0.880752 |
Target: 5'- aGUGUgggaccagaaGCUGCCGcCACGGgguucGCCGGUg -3' miRNA: 3'- cCACAg---------UGGCGGCuGUGCCa----CGGCCG- -5' |
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10327 | 5' | -59.5 | NC_002687.1 | + | 84675 | 0.68 | 0.846271 |
Target: 5'- --cGUCAUgGCCGuCGuCGGUGuuCCGGCc -3' miRNA: 3'- ccaCAGUGgCGGCuGU-GCCAC--GGCCG- -5' |
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10327 | 5' | -59.5 | NC_002687.1 | + | 146136 | 0.68 | 0.846271 |
Target: 5'- aGGcgGcCAUCGCCGAgGCGGagGCCGuGUu -3' miRNA: 3'- -CCa-CaGUGGCGGCUgUGCCa-CGGC-CG- -5' |
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10327 | 5' | -59.5 | NC_002687.1 | + | 174237 | 0.68 | 0.853512 |
Target: 5'- cGGUGuUCACUGUuuCGAgAUGGUucgucuGCCGGUa -3' miRNA: 3'- -CCAC-AGUGGCG--GCUgUGCCA------CGGCCG- -5' |
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10327 | 5' | -59.5 | NC_002687.1 | + | 164660 | 0.68 | 0.860585 |
Target: 5'- ---uUCAauGUCGACAugcCGGUGCCGGUg -3' miRNA: 3'- ccacAGUggCGGCUGU---GCCACGGCCG- -5' |
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10327 | 5' | -59.5 | NC_002687.1 | + | 305059 | 0.67 | 0.897485 |
Target: 5'- aGUGUC-CC-CCGuuuguuguuguaguACAUGGUGuuGGCg -3' miRNA: 3'- cCACAGuGGcGGC--------------UGUGCCACggCCG- -5' |
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10327 | 5' | -59.5 | NC_002687.1 | + | 96338 | 0.67 | 0.899259 |
Target: 5'- cGGUGUCcUCGUgGAUcgguucgagguuGCucgcgugcuuGGUGCCGGCg -3' miRNA: 3'- -CCACAGuGGCGgCUG------------UG----------CCACGGCCG- -5' |
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10327 | 5' | -59.5 | NC_002687.1 | + | 40044 | 0.67 | 0.891449 |
Target: 5'- --gGUCAacgcccCCGCCGACAggacauggcgucgcCGGgGCUGGCu -3' miRNA: 3'- ccaCAGU------GGCGGCUGU--------------GCCaCGGCCG- -5' |
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10327 | 5' | -59.5 | NC_002687.1 | + | 307459 | 0.67 | 0.912812 |
Target: 5'- --cGUCACCGCCGuccccaucagugucCAUGG-GCgCGGUa -3' miRNA: 3'- ccaCAGUGGCGGCu-------------GUGCCaCG-GCCG- -5' |
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10327 | 5' | -59.5 | NC_002687.1 | + | 166271 | 0.67 | 0.915493 |
Target: 5'- --gGUCuuCUGCCGAgAgGGUgagcacgGCCGGCg -3' miRNA: 3'- ccaCAGu-GGCGGCUgUgCCA-------CGGCCG- -5' |
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10327 | 5' | -59.5 | NC_002687.1 | + | 84914 | 0.67 | 0.905043 |
Target: 5'- aGGuUGUacagCACCGaCGGCACGacgaUGCCGGUg -3' miRNA: 3'- -CC-ACA----GUGGCgGCUGUGCc---ACGGCCG- -5' |
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10327 | 5' | -59.5 | NC_002687.1 | + | 158829 | 0.67 | 0.898669 |
Target: 5'- --cGUCGCCGCCGgucgaaaGCcCGGaGgCGGCg -3' miRNA: 3'- ccaCAGUGGCGGC-------UGuGCCaCgGCCG- -5' |
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10327 | 5' | -59.5 | NC_002687.1 | + | 253085 | 0.67 | 0.905043 |
Target: 5'- --gGUCACCGCCGcACACGccGCCu-- -3' miRNA: 3'- ccaCAGUGGCGGC-UGUGCcaCGGccg -5' |
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10327 | 5' | -59.5 | NC_002687.1 | + | 254708 | 0.67 | 0.912812 |
Target: 5'- --gGUCACCGCCGACcacagcaugucaaacACGcGUuCgGGCa -3' miRNA: 3'- ccaCAGUGGCGGCUG---------------UGC-CAcGgCCG- -5' |
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10327 | 5' | -59.5 | NC_002687.1 | + | 125515 | 0.67 | 0.905043 |
Target: 5'- uGUGUgcuuCCGUucauCGACACGGacuccGCCGGCu -3' miRNA: 3'- cCACAgu--GGCG----GCUGUGCCa----CGGCCG- -5' |
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10327 | 5' | -59.5 | NC_002687.1 | + | 170163 | 0.67 | 0.905043 |
Target: 5'- cGUGUCGaCGUcggcgucggccaCGACACGGUGgacCUGGCg -3' miRNA: 3'- cCACAGUgGCG------------GCUGUGCCAC---GGCCG- -5' |
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10327 | 5' | -59.5 | NC_002687.1 | + | 135626 | 0.67 | 0.899259 |
Target: 5'- -cUGgcgUACCG-CGACGCGGUGCagCGGUu -3' miRNA: 3'- ccACa--GUGGCgGCUGUGCCACG--GCCG- -5' |
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10327 | 5' | -59.5 | NC_002687.1 | + | 98168 | 0.67 | 0.899259 |
Target: 5'- aGUGccagCGgUGCCGA--UGGUGCCGGUg -3' miRNA: 3'- cCACa---GUgGCGGCUguGCCACGGCCG- -5' |
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10327 | 5' | -59.5 | NC_002687.1 | + | 137350 | 0.67 | 0.88711 |
Target: 5'- -cUGUCGgCGUCGAagACGG-GCUGGCc -3' miRNA: 3'- ccACAGUgGCGGCUg-UGCCaCGGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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