miRNA display CGI


Results 21 - 40 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10327 5' -59.5 NC_002687.1 + 226505 0.66 0.924732
Target:  5'- cGGUGgCGCCGCUGggacugauggcgccGCugGGacUGCUGGa -3'
miRNA:   3'- -CCACaGUGGCGGC--------------UGugCC--ACGGCCg -5'
10327 5' -59.5 NC_002687.1 + 85521 0.66 0.921216
Target:  5'- --gGUC-CCGCCGGCGCGGcagGaCCacguGGCc -3'
miRNA:   3'- ccaCAGuGGCGGCUGUGCCa--C-GG----CCG- -5'
10327 5' -59.5 NC_002687.1 + 159345 0.66 0.921216
Target:  5'- aGGUGcaGCUGCaGGCGCuGUGCuCGGCc -3'
miRNA:   3'- -CCACagUGGCGgCUGUGcCACG-GCCG- -5'
10327 5' -59.5 NC_002687.1 + 253383 0.67 0.916023
Target:  5'- aGGUGUgggucuuuucgCACgGCCGGCAgGGagaaCGGCg -3'
miRNA:   3'- -CCACA-----------GUGgCGGCUGUgCCacg-GCCG- -5'
10327 5' -59.5 NC_002687.1 + 166271 0.67 0.915493
Target:  5'- --gGUCuuCUGCCGAgAgGGUgagcacgGCCGGCg -3'
miRNA:   3'- ccaCAGu-GGCGGCUgUgCCA-------CGGCCG- -5'
10327 5' -59.5 NC_002687.1 + 307459 0.67 0.912812
Target:  5'- --cGUCACCGCCGuccccaucagugucCAUGG-GCgCGGUa -3'
miRNA:   3'- ccaCAGUGGCGGCu-------------GUGCCaCG-GCCG- -5'
10327 5' -59.5 NC_002687.1 + 254708 0.67 0.912812
Target:  5'- --gGUCACCGCCGACcacagcaugucaaacACGcGUuCgGGCa -3'
miRNA:   3'- ccaCAGUGGCGGCUG---------------UGC-CAcGgCCG- -5'
10327 5' -59.5 NC_002687.1 + 125515 0.67 0.905043
Target:  5'- uGUGUgcuuCCGUucauCGACACGGacuccGCCGGCu -3'
miRNA:   3'- cCACAgu--GGCG----GCUGUGCCa----CGGCCG- -5'
10327 5' -59.5 NC_002687.1 + 170163 0.67 0.905043
Target:  5'- cGUGUCGaCGUcggcgucggccaCGACACGGUGgacCUGGCg -3'
miRNA:   3'- cCACAGUgGCG------------GCUGUGCCAC---GGCCG- -5'
10327 5' -59.5 NC_002687.1 + 84914 0.67 0.905043
Target:  5'- aGGuUGUacagCACCGaCGGCACGacgaUGCCGGUg -3'
miRNA:   3'- -CC-ACA----GUGGCgGCUGUGCc---ACGGCCG- -5'
10327 5' -59.5 NC_002687.1 + 253085 0.67 0.905043
Target:  5'- --gGUCACCGCCGcACACGccGCCu-- -3'
miRNA:   3'- ccaCAGUGGCGGC-UGUGCcaCGGccg -5'
10327 5' -59.5 NC_002687.1 + 135626 0.67 0.899259
Target:  5'- -cUGgcgUACCG-CGACGCGGUGCagCGGUu -3'
miRNA:   3'- ccACa--GUGGCgGCUGUGCCACG--GCCG- -5'
10327 5' -59.5 NC_002687.1 + 96338 0.67 0.899259
Target:  5'- cGGUGUCcUCGUgGAUcgguucgagguuGCucgcgugcuuGGUGCCGGCg -3'
miRNA:   3'- -CCACAGuGGCGgCUG------------UG----------CCACGGCCG- -5'
10327 5' -59.5 NC_002687.1 + 98168 0.67 0.899259
Target:  5'- aGUGccagCGgUGCCGA--UGGUGCCGGUg -3'
miRNA:   3'- cCACa---GUgGCGGCUguGCCACGGCCG- -5'
10327 5' -59.5 NC_002687.1 + 158829 0.67 0.898669
Target:  5'- --cGUCGCCGCCGgucgaaaGCcCGGaGgCGGCg -3'
miRNA:   3'- ccaCAGUGGCGGC-------UGuGCCaCgGCCG- -5'
10327 5' -59.5 NC_002687.1 + 305059 0.67 0.897485
Target:  5'- aGUGUC-CC-CCGuuuguuguuguaguACAUGGUGuuGGCg -3'
miRNA:   3'- cCACAGuGGcGGC--------------UGUGCCACggCCG- -5'
10327 5' -59.5 NC_002687.1 + 40044 0.67 0.891449
Target:  5'- --gGUCAacgcccCCGCCGACAggacauggcgucgcCGGgGCUGGCu -3'
miRNA:   3'- ccaCAGU------GGCGGCUGU--------------GCCaCGGCCG- -5'
10327 5' -59.5 NC_002687.1 + 137350 0.67 0.88711
Target:  5'- -cUGUCGgCGUCGAagACGG-GCUGGCc -3'
miRNA:   3'- ccACAGUgGCGGCUg-UGCCaCGGCCG- -5'
10327 5' -59.5 NC_002687.1 + 254276 0.68 0.880752
Target:  5'- cGGUGUCGCagcaGCC-ACGCGugacGCCGGa -3'
miRNA:   3'- -CCACAGUGg---CGGcUGUGCca--CGGCCg -5'
10327 5' -59.5 NC_002687.1 + 215347 0.68 0.880752
Target:  5'- -aUGUCGCCGCCcu--CGGccccGCCGGUg -3'
miRNA:   3'- ccACAGUGGCGGcuguGCCa---CGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.