miRNA display CGI


Results 41 - 60 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10327 5' -59.5 NC_002687.1 + 291292 0.68 0.880752
Target:  5'- ---uUCACCGCUuaccucGCGCGGUGCCcagcGGCc -3'
miRNA:   3'- ccacAGUGGCGGc-----UGUGCCACGG----CCG- -5'
10327 5' -59.5 NC_002687.1 + 215347 0.68 0.880752
Target:  5'- -aUGUCGCCGCCcu--CGGccccGCCGGUg -3'
miRNA:   3'- ccACAGUGGCGGcuguGCCa---CGGCCG- -5'
10327 5' -59.5 NC_002687.1 + 164660 0.68 0.860585
Target:  5'- ---uUCAauGUCGACAugcCGGUGCCGGUg -3'
miRNA:   3'- ccacAGUggCGGCUGU---GCCACGGCCG- -5'
10327 5' -59.5 NC_002687.1 + 204575 0.68 0.853512
Target:  5'- uGUGUCA-UGCCGAaGCGGUGUCGa- -3'
miRNA:   3'- cCACAGUgGCGGCUgUGCCACGGCcg -5'
10327 5' -59.5 NC_002687.1 + 205973 0.68 0.853512
Target:  5'- cGGgagaGCCGUgaACACGGUGUCGGUg -3'
miRNA:   3'- -CCacagUGGCGgcUGUGCCACGGCCG- -5'
10327 5' -59.5 NC_002687.1 + 174237 0.68 0.853512
Target:  5'- cGGUGuUCACUGUuuCGAgAUGGUucgucuGCCGGUa -3'
miRNA:   3'- -CCAC-AGUGGCG--GCUgUGCCA------CGGCCG- -5'
10327 5' -59.5 NC_002687.1 + 146136 0.68 0.846271
Target:  5'- aGGcgGcCAUCGCCGAgGCGGagGCCGuGUu -3'
miRNA:   3'- -CCa-CaGUGGCGGCUgUGCCa-CGGC-CG- -5'
10327 5' -59.5 NC_002687.1 + 84675 0.68 0.846271
Target:  5'- --cGUCAUgGCCGuCGuCGGUGuuCCGGCc -3'
miRNA:   3'- ccaCAGUGgCGGCuGU-GCCAC--GGCCG- -5'
10327 5' -59.5 NC_002687.1 + 117958 0.69 0.838868
Target:  5'- cGGUGuUCAUCacacCCGGCGCgGGUGuaGGCg -3'
miRNA:   3'- -CCAC-AGUGGc---GGCUGUG-CCACggCCG- -5'
10327 5' -59.5 NC_002687.1 + 137808 0.69 0.838868
Target:  5'- --gGUCcUCGCCGAUguugACGGUGCCGa- -3'
miRNA:   3'- ccaCAGuGGCGGCUG----UGCCACGGCcg -5'
10327 5' -59.5 NC_002687.1 + 57347 0.69 0.836616
Target:  5'- cGGUGUCcgugcGCCGCCGAaugguuucaaGGUGUacuauaaCGGCa -3'
miRNA:   3'- -CCACAG-----UGGCGGCUgug-------CCACG-------GCCG- -5'
10327 5' -59.5 NC_002687.1 + 256207 0.69 0.831307
Target:  5'- --cGUCGaaagUGCCGACACgGGUGCgcaGGCg -3'
miRNA:   3'- ccaCAGUg---GCGGCUGUG-CCACGg--CCG- -5'
10327 5' -59.5 NC_002687.1 + 59414 0.69 0.823595
Target:  5'- aGGUGcCGUCGCuCGACAUcgucGUGUCGGCg -3'
miRNA:   3'- -CCACaGUGGCG-GCUGUGc---CACGGCCG- -5'
10327 5' -59.5 NC_002687.1 + 316040 0.69 0.822816
Target:  5'- cGGUGg---UGCCGAUggugccgAUGGUGCCGGUg -3'
miRNA:   3'- -CCACagugGCGGCUG-------UGCCACGGCCG- -5'
10327 5' -59.5 NC_002687.1 + 78112 0.69 0.815738
Target:  5'- uGGUGUUuCgGCCGugGCGGcgGCgucugaaaCGGCa -3'
miRNA:   3'- -CCACAGuGgCGGCugUGCCa-CG--------GCCG- -5'
10327 5' -59.5 NC_002687.1 + 97818 0.69 0.815738
Target:  5'- --cGgCACCGCUGGCAC--UGCUGGCa -3'
miRNA:   3'- ccaCaGUGGCGGCUGUGccACGGCCG- -5'
10327 5' -59.5 NC_002687.1 + 224140 0.69 0.815738
Target:  5'- cGGUGgcggUGgCGCUGGCGCuGGcGCUGGCg -3'
miRNA:   3'- -CCACa---GUgGCGGCUGUG-CCaCGGCCG- -5'
10327 5' -59.5 NC_002687.1 + 300013 0.69 0.807741
Target:  5'- gGGUGUCGCCGCCGgggcacACACGaUGCg--- -3'
miRNA:   3'- -CCACAGUGGCGGC------UGUGCcACGgccg -5'
10327 5' -59.5 NC_002687.1 + 257952 0.69 0.807741
Target:  5'- uGGUGUCugacAUgGUCGACAUGGUcaaCGGCa -3'
miRNA:   3'- -CCACAG----UGgCGGCUGUGCCAcg-GCCG- -5'
10327 5' -59.5 NC_002687.1 + 131613 0.69 0.807741
Target:  5'- gGGUaGUUAUCGCCucguGACGCGcUGuuGGCg -3'
miRNA:   3'- -CCA-CAGUGGCGG----CUGUGCcACggCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.