miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10327 5' -59.5 NC_002687.1 + 18616 0.68 0.880752
Target:  5'- aGUGUgggaccagaaGCUGCCGcCACGGgguucGCCGGUg -3'
miRNA:   3'- cCACAg---------UGGCGGCuGUGCCa----CGGCCG- -5'
10327 5' -59.5 NC_002687.1 + 19502 0.66 0.944184
Target:  5'- cGUGaUguCCGCUGACcCGG-GCCaGGCc -3'
miRNA:   3'- cCAC-AguGGCGGCUGuGCCaCGG-CCG- -5'
10327 5' -59.5 NC_002687.1 + 23710 0.71 0.730582
Target:  5'- ---cUCACCGCCGACGCcccuCCGGCa -3'
miRNA:   3'- ccacAGUGGCGGCUGUGccacGGCCG- -5'
10327 5' -59.5 NC_002687.1 + 27192 0.76 0.43248
Target:  5'- --cGUCGCCcCCGACACGGUcGCUGaGCg -3'
miRNA:   3'- ccaCAGUGGcGGCUGUGCCA-CGGC-CG- -5'
10327 5' -59.5 NC_002687.1 + 40044 0.67 0.891449
Target:  5'- --gGUCAacgcccCCGCCGACAggacauggcgucgcCGGgGCUGGCu -3'
miRNA:   3'- ccaCAGU------GGCGGCUGU--------------GCCaCGGCCG- -5'
10327 5' -59.5 NC_002687.1 + 57347 0.69 0.836616
Target:  5'- cGGUGUCcgugcGCCGCCGAaugguuucaaGGUGUacuauaaCGGCa -3'
miRNA:   3'- -CCACAG-----UGGCGGCUgug-------CCACG-------GCCG- -5'
10327 5' -59.5 NC_002687.1 + 59040 0.66 0.926208
Target:  5'- aGGcca-GCCGCCGACACGacgaUGUCGaGCg -3'
miRNA:   3'- -CCacagUGGCGGCUGUGCc---ACGGC-CG- -5'
10327 5' -59.5 NC_002687.1 + 59414 0.69 0.823595
Target:  5'- aGGUGcCGUCGCuCGACAUcgucGUGUCGGCg -3'
miRNA:   3'- -CCACaGUGGCG-GCUGUGc---CACGGCCG- -5'
10327 5' -59.5 NC_002687.1 + 61178 0.72 0.675621
Target:  5'- -cUGUCGCCGCuCGACGaGGgacUGCCGaGCg -3'
miRNA:   3'- ccACAGUGGCG-GCUGUgCC---ACGGC-CG- -5'
10327 5' -59.5 NC_002687.1 + 65042 0.72 0.647646
Target:  5'- ----aCAUgGCCGACGCGGUGCUaGGUg -3'
miRNA:   3'- ccacaGUGgCGGCUGUGCCACGG-CCG- -5'
10327 5' -59.5 NC_002687.1 + 69045 0.66 0.931001
Target:  5'- uGGUG--GCgGCgGugGCGGUgguGUCGGCg -3'
miRNA:   3'- -CCACagUGgCGgCugUGCCA---CGGCCG- -5'
10327 5' -59.5 NC_002687.1 + 72924 0.7 0.774487
Target:  5'- cGUGUgccgacgccgcCGCCGCCGACACaccGCCGaGCa -3'
miRNA:   3'- cCACA-----------GUGGCGGCUGUGccaCGGC-CG- -5'
10327 5' -59.5 NC_002687.1 + 76443 0.66 0.939558
Target:  5'- cGUGUCACacacgacacaGCgGAaACGGUcgucauucuggucGCCGGCg -3'
miRNA:   3'- cCACAGUGg---------CGgCUgUGCCA-------------CGGCCG- -5'
10327 5' -59.5 NC_002687.1 + 76753 0.66 0.931001
Target:  5'- gGGUGUCccgaggGCC-CCGACggaggagaACGGUGCCa-- -3'
miRNA:   3'- -CCACAG------UGGcGGCUG--------UGCCACGGccg -5'
10327 5' -59.5 NC_002687.1 + 76975 0.66 0.931001
Target:  5'- --cGUCGCCGCCaccgucuaGCACGaG-GCaCGGCa -3'
miRNA:   3'- ccaCAGUGGCGGc-------UGUGC-CaCG-GCCG- -5'
10327 5' -59.5 NC_002687.1 + 78112 0.69 0.815738
Target:  5'- uGGUGUUuCgGCCGugGCGGcgGCgucugaaaCGGCa -3'
miRNA:   3'- -CCACAGuGgCGGCugUGCCa-CG--------GCCG- -5'
10327 5' -59.5 NC_002687.1 + 80686 0.66 0.938691
Target:  5'- aGGUagcGUCGCUGaacuCCGACcgagucauguacguGcCGGUGUCGGCa -3'
miRNA:   3'- -CCA---CAGUGGC----GGCUG--------------U-GCCACGGCCG- -5'
10327 5' -59.5 NC_002687.1 + 81569 0.69 0.799611
Target:  5'- uGGcGUcCGuuGCCGGCguaGCGGUGCCcgaGGCc -3'
miRNA:   3'- -CCaCA-GUggCGGCUG---UGCCACGG---CCG- -5'
10327 5' -59.5 NC_002687.1 + 83375 0.71 0.71156
Target:  5'- gGGUGUCGCCGaCGACACcGUcggaaccuacaccGUCGGUg -3'
miRNA:   3'- -CCACAGUGGCgGCUGUGcCA-------------CGGCCG- -5'
10327 5' -59.5 NC_002687.1 + 83678 0.72 0.647646
Target:  5'- cGGUGUCGCUaGCCGACG-GGaUGCCGu- -3'
miRNA:   3'- -CCACAGUGG-CGGCUGUgCC-ACGGCcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.