miRNA display CGI


Results 21 - 40 of 84 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10327 5' -59.5 NC_002687.1 + 84675 0.68 0.846271
Target:  5'- --cGUCAUgGCCGuCGuCGGUGuuCCGGCc -3'
miRNA:   3'- ccaCAGUGgCGGCuGU-GCCAC--GGCCG- -5'
10327 5' -59.5 NC_002687.1 + 84914 0.67 0.905043
Target:  5'- aGGuUGUacagCACCGaCGGCACGacgaUGCCGGUg -3'
miRNA:   3'- -CC-ACA----GUGGCgGCUGUGCc---ACGGCCG- -5'
10327 5' -59.5 NC_002687.1 + 85521 0.66 0.921216
Target:  5'- --gGUC-CCGCCGGCGCGGcagGaCCacguGGCc -3'
miRNA:   3'- ccaCAGuGGCGGCUGUGCCa--C-GG----CCG- -5'
10327 5' -59.5 NC_002687.1 + 89709 0.77 0.408359
Target:  5'- cGGUGUCuCCGCCGAgGuCGGUGUCGuCg -3'
miRNA:   3'- -CCACAGuGGCGGCUgU-GCCACGGCcG- -5'
10327 5' -59.5 NC_002687.1 + 96338 0.67 0.899259
Target:  5'- cGGUGUCcUCGUgGAUcgguucgagguuGCucgcgugcuuGGUGCCGGCg -3'
miRNA:   3'- -CCACAGuGGCGgCUG------------UG----------CCACGGCCG- -5'
10327 5' -59.5 NC_002687.1 + 97624 0.7 0.765891
Target:  5'- aGUGaUgACgUGCCGGCACcGUGUCGGCg -3'
miRNA:   3'- cCAC-AgUG-GCGGCUGUGcCACGGCCG- -5'
10327 5' -59.5 NC_002687.1 + 97782 0.66 0.931001
Target:  5'- -cUGgCACCGCUGGCACc--GCUGGCc -3'
miRNA:   3'- ccACaGUGGCGGCUGUGccaCGGCCG- -5'
10327 5' -59.5 NC_002687.1 + 97818 0.69 0.815738
Target:  5'- --cGgCACCGCUGGCAC--UGCUGGCa -3'
miRNA:   3'- ccaCaGUGGCGGCUGUGccACGGCCG- -5'
10327 5' -59.5 NC_002687.1 + 97996 1.14 0.001946
Target:  5'- cGGUGUCACCGCCGACACGGUGCCGGCa -3'
miRNA:   3'- -CCACAGUGGCGGCUGUGCCACGGCCG- -5'
10327 5' -59.5 NC_002687.1 + 98168 0.67 0.899259
Target:  5'- aGUGccagCGgUGCCGA--UGGUGCCGGUg -3'
miRNA:   3'- cCACa---GUgGCGGCUguGCCACGGCCG- -5'
10327 5' -59.5 NC_002687.1 + 117958 0.69 0.838868
Target:  5'- cGGUGuUCAUCacacCCGGCGCgGGUGuaGGCg -3'
miRNA:   3'- -CCAC-AGUGGc---GGCUGUG-CCACggCCG- -5'
10327 5' -59.5 NC_002687.1 + 118196 0.71 0.729683
Target:  5'- cGGUG-CAgCGCCugcgucgaacgagGACgACGGUGCCGcGCc -3'
miRNA:   3'- -CCACaGUgGCGG-------------CUG-UGCCACGGC-CG- -5'
10327 5' -59.5 NC_002687.1 + 123658 0.66 0.939988
Target:  5'- --cGUCguaACCGCCGAUcgucuCGuagGCCGGCu -3'
miRNA:   3'- ccaCAG---UGGCGGCUGu----GCca-CGGCCG- -5'
10327 5' -59.5 NC_002687.1 + 125515 0.67 0.905043
Target:  5'- uGUGUgcuuCCGUucauCGACACGGacuccGCCGGCu -3'
miRNA:   3'- cCACAgu--GGCG----GCUGUGCCa----CGGCCG- -5'
10327 5' -59.5 NC_002687.1 + 127853 0.66 0.926208
Target:  5'- uGGUGUCugCGaCGACGa--UGUCGGUg -3'
miRNA:   3'- -CCACAGugGCgGCUGUgccACGGCCG- -5'
10327 5' -59.5 NC_002687.1 + 131613 0.69 0.807741
Target:  5'- gGGUaGUUAUCGCCucguGACGCGcUGuuGGCg -3'
miRNA:   3'- -CCA-CAGUGGCGG----CUGUGCcACggCCG- -5'
10327 5' -59.5 NC_002687.1 + 133855 0.71 0.694133
Target:  5'- cGGUGUCAaaGaCGACGCuGUGCgCGGUa -3'
miRNA:   3'- -CCACAGUggCgGCUGUGcCACG-GCCG- -5'
10327 5' -59.5 NC_002687.1 + 135626 0.67 0.899259
Target:  5'- -cUGgcgUACCG-CGACGCGGUGCagCGGUu -3'
miRNA:   3'- ccACa--GUGGCgGCUGUGCCACG--GCCG- -5'
10327 5' -59.5 NC_002687.1 + 137350 0.67 0.88711
Target:  5'- -cUGUCGgCGUCGAagACGG-GCUGGCc -3'
miRNA:   3'- ccACAGUgGCGGCUg-UGCCaCGGCCG- -5'
10327 5' -59.5 NC_002687.1 + 137808 0.69 0.838868
Target:  5'- --gGUCcUCGCCGAUguugACGGUGCCGa- -3'
miRNA:   3'- ccaCAGuGGCGGCUG----UGCCACGGCcg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.