miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10327 5' -59.5 NC_002687.1 + 330943 0.66 0.926208
Target:  5'- cGUGa-AUCGCC-ACgACGGcUGCCGGCa -3'
miRNA:   3'- cCACagUGGCGGcUG-UGCC-ACGGCCG- -5'
10327 5' -59.5 NC_002687.1 + 316040 0.69 0.822816
Target:  5'- cGGUGg---UGCCGAUggugccgAUGGUGCCGGUg -3'
miRNA:   3'- -CCACagugGCGGCUG-------UGCCACGGCCG- -5'
10327 5' -59.5 NC_002687.1 + 307628 0.73 0.619578
Target:  5'- uGGUGcuggCACgGgCGGCgGCGGUGCUGGUg -3'
miRNA:   3'- -CCACa---GUGgCgGCUG-UGCCACGGCCG- -5'
10327 5' -59.5 NC_002687.1 + 307459 0.67 0.912812
Target:  5'- --cGUCACCGCCGuccccaucagugucCAUGG-GCgCGGUa -3'
miRNA:   3'- ccaCAGUGGCGGCu-------------GUGCCaCG-GCCG- -5'
10327 5' -59.5 NC_002687.1 + 305059 0.67 0.897485
Target:  5'- aGUGUC-CC-CCGuuuguuguuguaguACAUGGUGuuGGCg -3'
miRNA:   3'- cCACAGuGGcGGC--------------UGUGCCACggCCG- -5'
10327 5' -59.5 NC_002687.1 + 302466 0.66 0.944184
Target:  5'- cGGUGa-ACCGCuUGACGC---GCCGGCa -3'
miRNA:   3'- -CCACagUGGCG-GCUGUGccaCGGCCG- -5'
10327 5' -59.5 NC_002687.1 + 300013 0.69 0.807741
Target:  5'- gGGUGUCGCCGCCGgggcacACACGaUGCg--- -3'
miRNA:   3'- -CCACAGUGGCGGC------UGUGCcACGgccg -5'
10327 5' -59.5 NC_002687.1 + 295149 0.66 0.931001
Target:  5'- uGGcGUC-CUGCagcACACGGcGCCGGUg -3'
miRNA:   3'- -CCaCAGuGGCGgc-UGUGCCaCGGCCG- -5'
10327 5' -59.5 NC_002687.1 + 291292 0.68 0.880752
Target:  5'- ---uUCACCGCUuaccucGCGCGGUGCCcagcGGCc -3'
miRNA:   3'- ccacAGUGGCGGc-----UGUGCCACGG----CCG- -5'
10327 5' -59.5 NC_002687.1 + 281942 0.7 0.791354
Target:  5'- --gGUCGCgGCaggagcaGGgGCGGUGCCGGg -3'
miRNA:   3'- ccaCAGUGgCGg------CUgUGCCACGGCCg -5'
10327 5' -59.5 NC_002687.1 + 279662 0.7 0.751933
Target:  5'- --cGUCAggguCCGCUGACucuucuggugggccgGUGGUGCCGGCa -3'
miRNA:   3'- ccaCAGU----GGCGGCUG---------------UGCCACGGCCG- -5'
10327 5' -59.5 NC_002687.1 + 257952 0.69 0.807741
Target:  5'- uGGUGUCugacAUgGUCGACAUGGUcaaCGGCa -3'
miRNA:   3'- -CCACAG----UGgCGGCUGUGCCAcg-GCCG- -5'
10327 5' -59.5 NC_002687.1 + 256207 0.69 0.831307
Target:  5'- --cGUCGaaagUGCCGACACgGGUGCgcaGGCg -3'
miRNA:   3'- ccaCAGUg---GCGGCUGUG-CCACGg--CCG- -5'
10327 5' -59.5 NC_002687.1 + 254708 0.67 0.912812
Target:  5'- --gGUCACCGCCGACcacagcaugucaaacACGcGUuCgGGCa -3'
miRNA:   3'- ccaCAGUGGCGGCUG---------------UGC-CAcGgCCG- -5'
10327 5' -59.5 NC_002687.1 + 254276 0.68 0.880752
Target:  5'- cGGUGUCGCagcaGCC-ACGCGugacGCCGGa -3'
miRNA:   3'- -CCACAGUGg---CGGcUGUGCca--CGGCCg -5'
10327 5' -59.5 NC_002687.1 + 253383 0.67 0.916023
Target:  5'- aGGUGUgggucuuuucgCACgGCCGGCAgGGagaaCGGCg -3'
miRNA:   3'- -CCACA-----------GUGgCGGCUGUgCCacg-GCCG- -5'
10327 5' -59.5 NC_002687.1 + 253085 0.67 0.905043
Target:  5'- --gGUCACCGCCGcACACGccGCCu-- -3'
miRNA:   3'- ccaCAGUGGCGGC-UGUGCcaCGGccg -5'
10327 5' -59.5 NC_002687.1 + 239838 0.71 0.694133
Target:  5'- --gGUCcgGCCGCCGcgGCGGaUGCUGGCa -3'
miRNA:   3'- ccaCAG--UGGCGGCugUGCC-ACGGCCG- -5'
10327 5' -59.5 NC_002687.1 + 226933 0.71 0.739534
Target:  5'- gGGcGUCGCCccGUCGGCuccguCGGcUGCCGGUg -3'
miRNA:   3'- -CCaCAGUGG--CGGCUGu----GCC-ACGGCCG- -5'
10327 5' -59.5 NC_002687.1 + 226789 0.75 0.483092
Target:  5'- uGGUGcCGgUGCCGguGC-CGGUGCCGGUg -3'
miRNA:   3'- -CCACaGUgGCGGC--UGuGCCACGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.