miRNA display CGI


Results 21 - 40 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10327 5' -59.5 NC_002687.1 + 226505 0.66 0.924732
Target:  5'- cGGUGgCGCCGCUGggacugauggcgccGCugGGacUGCUGGa -3'
miRNA:   3'- -CCACaGUGGCGGC--------------UGugCC--ACGGCCg -5'
10327 5' -59.5 NC_002687.1 + 224848 0.8 0.282534
Target:  5'- cGGaga-GCCGCCGACGCGGcggcGCCGGCa -3'
miRNA:   3'- -CCacagUGGCGGCUGUGCCa---CGGCCG- -5'
10327 5' -59.5 NC_002687.1 + 224176 0.66 0.931001
Target:  5'- cGGUGgcgggggCAgUGCUgGugGCGGUGgCGGUg -3'
miRNA:   3'- -CCACa------GUgGCGG-CugUGCCACgGCCG- -5'
10327 5' -59.5 NC_002687.1 + 224140 0.69 0.815738
Target:  5'- cGGUGgcggUGgCGCUGGCGCuGGcGCUGGCg -3'
miRNA:   3'- -CCACa---GUgGCGGCUGUG-CCaCGGCCG- -5'
10327 5' -59.5 NC_002687.1 + 220928 0.66 0.944184
Target:  5'- cGUGaUguCCGCUGACcCGG-GCCaGGCc -3'
miRNA:   3'- cCAC-AguGGCGGCUGuGCCaCGG-CCG- -5'
10327 5' -59.5 NC_002687.1 + 217900 0.66 0.931001
Target:  5'- aGUGUCACCGgaGGCgaaaACGuGUGUgGGUg -3'
miRNA:   3'- cCACAGUGGCggCUG----UGC-CACGgCCG- -5'
10327 5' -59.5 NC_002687.1 + 215347 0.68 0.880752
Target:  5'- -aUGUCGCCGCCcu--CGGccccGCCGGUg -3'
miRNA:   3'- ccACAGUGGCGGcuguGCCa---CGGCCG- -5'
10327 5' -59.5 NC_002687.1 + 214528 0.66 0.931001
Target:  5'- aGGUGUUuCCGCCGuACAggaaagaGGcGgCGGCg -3'
miRNA:   3'- -CCACAGuGGCGGC-UGUg------CCaCgGCCG- -5'
10327 5' -59.5 NC_002687.1 + 212344 0.75 0.518367
Target:  5'- cGGgcucGcCACCGUCGACAgCGGUGgUGGCa -3'
miRNA:   3'- -CCa---CaGUGGCGGCUGU-GCCACgGCCG- -5'
10327 5' -59.5 NC_002687.1 + 209449 0.72 0.65699
Target:  5'- cGGaGUCAgaGuCCGACGaaGUGCCGGCg -3'
miRNA:   3'- -CCaCAGUggC-GGCUGUgcCACGGCCG- -5'
10327 5' -59.5 NC_002687.1 + 205973 0.68 0.853512
Target:  5'- cGGgagaGCCGUgaACACGGUGUCGGUg -3'
miRNA:   3'- -CCacagUGGCGgcUGUGCCACGGCCG- -5'
10327 5' -59.5 NC_002687.1 + 204575 0.68 0.853512
Target:  5'- uGUGUCA-UGCCGAaGCGGUGUCGa- -3'
miRNA:   3'- cCACAGUgGCGGCUgUGCCACGGCcg -5'
10327 5' -59.5 NC_002687.1 + 204175 0.66 0.935144
Target:  5'- cGG-GUCGCauaucagCGCgGGgGCGGUGCCGaacaGCa -3'
miRNA:   3'- -CCaCAGUG-------GCGgCUgUGCCACGGC----CG- -5'
10327 5' -59.5 NC_002687.1 + 200089 0.66 0.930531
Target:  5'- --aGcCGCaaagGUCGACAugcucguUGGUGCCGGCg -3'
miRNA:   3'- ccaCaGUGg---CGGCUGU-------GCCACGGCCG- -5'
10327 5' -59.5 NC_002687.1 + 195337 0.66 0.944184
Target:  5'- cGUGaUguCCGCUGACcCGG-GCCaGGCc -3'
miRNA:   3'- cCAC-AguGGCGGCUGuGCCaCGG-CCG- -5'
10327 5' -59.5 NC_002687.1 + 182376 0.72 0.684895
Target:  5'- --cGUCAUCGCCGAUA-GGUGuuGcGCg -3'
miRNA:   3'- ccaCAGUGGCGGCUGUgCCACggC-CG- -5'
10327 5' -59.5 NC_002687.1 + 174237 0.68 0.853512
Target:  5'- cGGUGuUCACUGUuuCGAgAUGGUucgucuGCCGGUa -3'
miRNA:   3'- -CCAC-AGUGGCG--GCUgUGCCA------CGGCCG- -5'
10327 5' -59.5 NC_002687.1 + 170163 0.67 0.905043
Target:  5'- cGUGUCGaCGUcggcgucggccaCGACACGGUGgacCUGGCg -3'
miRNA:   3'- cCACAGUgGCG------------GCUGUGCCAC---GGCCG- -5'
10327 5' -59.5 NC_002687.1 + 166271 0.67 0.915493
Target:  5'- --gGUCuuCUGCCGAgAgGGUgagcacgGCCGGCg -3'
miRNA:   3'- ccaCAGu-GGCGGCUgUgCCA-------CGGCCG- -5'
10327 5' -59.5 NC_002687.1 + 164660 0.68 0.860585
Target:  5'- ---uUCAauGUCGACAugcCGGUGCCGGUg -3'
miRNA:   3'- ccacAGUggCGGCUGU---GCCACGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.