Results 41 - 60 of 84 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10327 | 5' | -59.5 | NC_002687.1 | + | 159345 | 0.66 | 0.921216 |
Target: 5'- aGGUGcaGCUGCaGGCGCuGUGCuCGGCc -3' miRNA: 3'- -CCACagUGGCGgCUGUGcCACG-GCCG- -5' |
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10327 | 5' | -59.5 | NC_002687.1 | + | 158829 | 0.67 | 0.898669 |
Target: 5'- --cGUCGCCGCCGgucgaaaGCcCGGaGgCGGCg -3' miRNA: 3'- ccaCAGUGGCGGC-------UGuGCCaCgGCCG- -5' |
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10327 | 5' | -59.5 | NC_002687.1 | + | 155142 | 0.74 | 0.545478 |
Target: 5'- uGGcGUaCGCCGaCGACGCGGUGUcuaCGGCg -3' miRNA: 3'- -CCaCA-GUGGCgGCUGUGCCACG---GCCG- -5' |
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10327 | 5' | -59.5 | NC_002687.1 | + | 146136 | 0.68 | 0.846271 |
Target: 5'- aGGcgGcCAUCGCCGAgGCGGagGCCGuGUu -3' miRNA: 3'- -CCa-CaGUGGCGGCUgUGCCa-CGGC-CG- -5' |
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10327 | 5' | -59.5 | NC_002687.1 | + | 137808 | 0.69 | 0.838868 |
Target: 5'- --gGUCcUCGCCGAUguugACGGUGCCGa- -3' miRNA: 3'- ccaCAGuGGCGGCUG----UGCCACGGCcg -5' |
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10327 | 5' | -59.5 | NC_002687.1 | + | 137350 | 0.67 | 0.88711 |
Target: 5'- -cUGUCGgCGUCGAagACGG-GCUGGCc -3' miRNA: 3'- ccACAGUgGCGGCUg-UGCCaCGGCCG- -5' |
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10327 | 5' | -59.5 | NC_002687.1 | + | 135626 | 0.67 | 0.899259 |
Target: 5'- -cUGgcgUACCG-CGACGCGGUGCagCGGUu -3' miRNA: 3'- ccACa--GUGGCgGCUGUGCCACG--GCCG- -5' |
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10327 | 5' | -59.5 | NC_002687.1 | + | 133855 | 0.71 | 0.694133 |
Target: 5'- cGGUGUCAaaGaCGACGCuGUGCgCGGUa -3' miRNA: 3'- -CCACAGUggCgGCUGUGcCACG-GCCG- -5' |
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10327 | 5' | -59.5 | NC_002687.1 | + | 131613 | 0.69 | 0.807741 |
Target: 5'- gGGUaGUUAUCGCCucguGACGCGcUGuuGGCg -3' miRNA: 3'- -CCA-CAGUGGCGG----CUGUGCcACggCCG- -5' |
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10327 | 5' | -59.5 | NC_002687.1 | + | 127853 | 0.66 | 0.926208 |
Target: 5'- uGGUGUCugCGaCGACGa--UGUCGGUg -3' miRNA: 3'- -CCACAGugGCgGCUGUgccACGGCCG- -5' |
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10327 | 5' | -59.5 | NC_002687.1 | + | 125515 | 0.67 | 0.905043 |
Target: 5'- uGUGUgcuuCCGUucauCGACACGGacuccGCCGGCu -3' miRNA: 3'- cCACAgu--GGCG----GCUGUGCCa----CGGCCG- -5' |
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10327 | 5' | -59.5 | NC_002687.1 | + | 123658 | 0.66 | 0.939988 |
Target: 5'- --cGUCguaACCGCCGAUcgucuCGuagGCCGGCu -3' miRNA: 3'- ccaCAG---UGGCGGCUGu----GCca-CGGCCG- -5' |
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10327 | 5' | -59.5 | NC_002687.1 | + | 118196 | 0.71 | 0.729683 |
Target: 5'- cGGUG-CAgCGCCugcgucgaacgagGACgACGGUGCCGcGCc -3' miRNA: 3'- -CCACaGUgGCGG-------------CUG-UGCCACGGC-CG- -5' |
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10327 | 5' | -59.5 | NC_002687.1 | + | 117958 | 0.69 | 0.838868 |
Target: 5'- cGGUGuUCAUCacacCCGGCGCgGGUGuaGGCg -3' miRNA: 3'- -CCAC-AGUGGc---GGCUGUG-CCACggCCG- -5' |
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10327 | 5' | -59.5 | NC_002687.1 | + | 98168 | 0.67 | 0.899259 |
Target: 5'- aGUGccagCGgUGCCGA--UGGUGCCGGUg -3' miRNA: 3'- cCACa---GUgGCGGCUguGCCACGGCCG- -5' |
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10327 | 5' | -59.5 | NC_002687.1 | + | 97996 | 1.14 | 0.001946 |
Target: 5'- cGGUGUCACCGCCGACACGGUGCCGGCa -3' miRNA: 3'- -CCACAGUGGCGGCUGUGCCACGGCCG- -5' |
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10327 | 5' | -59.5 | NC_002687.1 | + | 97818 | 0.69 | 0.815738 |
Target: 5'- --cGgCACCGCUGGCAC--UGCUGGCa -3' miRNA: 3'- ccaCaGUGGCGGCUGUGccACGGCCG- -5' |
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10327 | 5' | -59.5 | NC_002687.1 | + | 97782 | 0.66 | 0.931001 |
Target: 5'- -cUGgCACCGCUGGCACc--GCUGGCc -3' miRNA: 3'- ccACaGUGGCGGCUGUGccaCGGCCG- -5' |
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10327 | 5' | -59.5 | NC_002687.1 | + | 97624 | 0.7 | 0.765891 |
Target: 5'- aGUGaUgACgUGCCGGCACcGUGUCGGCg -3' miRNA: 3'- cCAC-AgUG-GCGGCUGUGcCACGGCCG- -5' |
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10327 | 5' | -59.5 | NC_002687.1 | + | 96338 | 0.67 | 0.899259 |
Target: 5'- cGGUGUCcUCGUgGAUcgguucgagguuGCucgcgugcuuGGUGCCGGCg -3' miRNA: 3'- -CCACAGuGGCGgCUG------------UG----------CCACGGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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