miRNA display CGI


Results 21 - 40 of 84 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10327 5' -59.5 NC_002687.1 + 40044 0.67 0.891449
Target:  5'- --gGUCAacgcccCCGCCGACAggacauggcgucgcCGGgGCUGGCu -3'
miRNA:   3'- ccaCAGU------GGCGGCUGU--------------GCCaCGGCCG- -5'
10327 5' -59.5 NC_002687.1 + 205973 0.68 0.853512
Target:  5'- cGGgagaGCCGUgaACACGGUGUCGGUg -3'
miRNA:   3'- -CCacagUGGCGgcUGUGCCACGGCCG- -5'
10327 5' -59.5 NC_002687.1 + 226933 0.71 0.739534
Target:  5'- gGGcGUCGCCccGUCGGCuccguCGGcUGCCGGUg -3'
miRNA:   3'- -CCaCAGUGG--CGGCUGu----GCC-ACGGCCG- -5'
10327 5' -59.5 NC_002687.1 + 226789 0.75 0.483092
Target:  5'- uGGUGcCGgUGCCGguGC-CGGUGCCGGUg -3'
miRNA:   3'- -CCACaGUgGCGGC--UGuGCCACGGCCG- -5'
10327 5' -59.5 NC_002687.1 + 200089 0.66 0.930531
Target:  5'- --aGcCGCaaagGUCGACAugcucguUGGUGCCGGCg -3'
miRNA:   3'- ccaCaGUGg---CGGCUGU-------GCCACGGCCG- -5'
10327 5' -59.5 NC_002687.1 + 307459 0.67 0.912812
Target:  5'- --cGUCACCGCCGuccccaucagugucCAUGG-GCgCGGUa -3'
miRNA:   3'- ccaCAGUGGCGGCu-------------GUGCCaCG-GCCG- -5'
10327 5' -59.5 NC_002687.1 + 57347 0.69 0.836616
Target:  5'- cGGUGUCcgugcGCCGCCGAaugguuucaaGGUGUacuauaaCGGCa -3'
miRNA:   3'- -CCACAG-----UGGCGGCUgug-------CCACG-------GCCG- -5'
10327 5' -59.5 NC_002687.1 + 27192 0.76 0.43248
Target:  5'- --cGUCGCCcCCGACACGGUcGCUGaGCg -3'
miRNA:   3'- ccaCAGUGGcGGCUGUGCCA-CGGC-CG- -5'
10327 5' -59.5 NC_002687.1 + 253085 0.67 0.905043
Target:  5'- --gGUCACCGCCGcACACGccGCCu-- -3'
miRNA:   3'- ccaCAGUGGCGGC-UGUGCcaCGGccg -5'
10327 5' -59.5 NC_002687.1 + 89709 0.77 0.408359
Target:  5'- cGGUGUCuCCGCCGAgGuCGGUGUCGuCg -3'
miRNA:   3'- -CCACAGuGGCGGCUgU-GCCACGGCcG- -5'
10327 5' -59.5 NC_002687.1 + 204575 0.68 0.853512
Target:  5'- uGUGUCA-UGCCGAaGCGGUGUCGa- -3'
miRNA:   3'- cCACAGUgGCGGCUgUGCCACGGCcg -5'
10327 5' -59.5 NC_002687.1 + 305059 0.67 0.897485
Target:  5'- aGUGUC-CC-CCGuuuguuguuguaguACAUGGUGuuGGCg -3'
miRNA:   3'- cCACAGuGGcGGC--------------UGUGCCACggCCG- -5'
10327 5' -59.5 NC_002687.1 + 97818 0.69 0.815738
Target:  5'- --cGgCACCGCUGGCAC--UGCUGGCa -3'
miRNA:   3'- ccaCaGUGGCGGCUGUGccACGGCCG- -5'
10327 5' -59.5 NC_002687.1 + 97624 0.7 0.765891
Target:  5'- aGUGaUgACgUGCCGGCACcGUGUCGGCg -3'
miRNA:   3'- cCAC-AgUG-GCGGCUGUGcCACGGCCG- -5'
10327 5' -59.5 NC_002687.1 + 239838 0.71 0.694133
Target:  5'- --gGUCcgGCCGCCGcgGCGGaUGCUGGCa -3'
miRNA:   3'- ccaCAG--UGGCGGCugUGCC-ACGGCCG- -5'
10327 5' -59.5 NC_002687.1 + 212344 0.75 0.518367
Target:  5'- cGGgcucGcCACCGUCGACAgCGGUGgUGGCa -3'
miRNA:   3'- -CCa---CaGUGGCGGCUGU-GCCACgGCCG- -5'
10327 5' -59.5 NC_002687.1 + 76753 0.66 0.931001
Target:  5'- gGGUGUCccgaggGCC-CCGACggaggagaACGGUGCCa-- -3'
miRNA:   3'- -CCACAG------UGGcGGCUG--------UGCCACGGccg -5'
10327 5' -59.5 NC_002687.1 + 97782 0.66 0.931001
Target:  5'- -cUGgCACCGCUGGCACc--GCUGGCc -3'
miRNA:   3'- ccACaGUGGCGGCUGUGccaCGGCCG- -5'
10327 5' -59.5 NC_002687.1 + 159345 0.66 0.921216
Target:  5'- aGGUGcaGCUGCaGGCGCuGUGCuCGGCc -3'
miRNA:   3'- -CCACagUGGCGgCUGUGcCACG-GCCG- -5'
10327 5' -59.5 NC_002687.1 + 166271 0.67 0.915493
Target:  5'- --gGUCuuCUGCCGAgAgGGUgagcacgGCCGGCg -3'
miRNA:   3'- ccaCAGu-GGCGGCUgUgCCA-------CGGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.