miRNA display CGI


Results 41 - 60 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10327 5' -59.5 NC_002687.1 + 69045 0.66 0.931001
Target:  5'- uGGUG--GCgGCgGugGCGGUgguGUCGGCg -3'
miRNA:   3'- -CCACagUGgCGgCugUGCCA---CGGCCG- -5'
10327 5' -59.5 NC_002687.1 + 40044 0.67 0.891449
Target:  5'- --gGUCAacgcccCCGCCGACAggacauggcgucgcCGGgGCUGGCu -3'
miRNA:   3'- ccaCAGU------GGCGGCUGU--------------GCCaCGGCCG- -5'
10327 5' -59.5 NC_002687.1 + 291292 0.68 0.880752
Target:  5'- ---uUCACCGCUuaccucGCGCGGUGCCcagcGGCc -3'
miRNA:   3'- ccacAGUGGCGGc-----UGUGCCACGG----CCG- -5'
10327 5' -59.5 NC_002687.1 + 81569 0.69 0.799611
Target:  5'- uGGcGUcCGuuGCCGGCguaGCGGUGCCcgaGGCc -3'
miRNA:   3'- -CCaCA-GUggCGGCUG---UGCCACGG---CCG- -5'
10327 5' -59.5 NC_002687.1 + 80686 0.66 0.938691
Target:  5'- aGGUagcGUCGCUGaacuCCGACcgagucauguacguGcCGGUGUCGGCa -3'
miRNA:   3'- -CCA---CAGUGGC----GGCUG--------------U-GCCACGGCCG- -5'
10327 5' -59.5 NC_002687.1 + 76443 0.66 0.939558
Target:  5'- cGUGUCACacacgacacaGCgGAaACGGUcgucauucuggucGCCGGCg -3'
miRNA:   3'- cCACAGUGg---------CGgCUgUGCCA-------------CGGCCG- -5'
10327 5' -59.5 NC_002687.1 + 195337 0.66 0.944184
Target:  5'- cGUGaUguCCGCUGACcCGG-GCCaGGCc -3'
miRNA:   3'- cCAC-AguGGCGGCUGuGCCaCGG-CCG- -5'
10327 5' -59.5 NC_002687.1 + 254708 0.67 0.912812
Target:  5'- --gGUCACCGCCGACcacagcaugucaaacACGcGUuCgGGCa -3'
miRNA:   3'- ccaCAGUGGCGGCUG---------------UGC-CAcGgCCG- -5'
10327 5' -59.5 NC_002687.1 + 125515 0.67 0.905043
Target:  5'- uGUGUgcuuCCGUucauCGACACGGacuccGCCGGCu -3'
miRNA:   3'- cCACAgu--GGCG----GCUGUGCCa----CGGCCG- -5'
10327 5' -59.5 NC_002687.1 + 170163 0.67 0.905043
Target:  5'- cGUGUCGaCGUcggcgucggccaCGACACGGUGgacCUGGCg -3'
miRNA:   3'- cCACAGUgGCG------------GCUGUGCCAC---GGCCG- -5'
10327 5' -59.5 NC_002687.1 + 131613 0.69 0.807741
Target:  5'- gGGUaGUUAUCGCCucguGACGCGcUGuuGGCg -3'
miRNA:   3'- -CCA-CAGUGGCGG----CUGUGCcACggCCG- -5'
10327 5' -59.5 NC_002687.1 + 78112 0.69 0.815738
Target:  5'- uGGUGUUuCgGCCGugGCGGcgGCgucugaaaCGGCa -3'
miRNA:   3'- -CCACAGuGgCGGCugUGCCa-CG--------GCCG- -5'
10327 5' -59.5 NC_002687.1 + 316040 0.69 0.822816
Target:  5'- cGGUGg---UGCCGAUggugccgAUGGUGCCGGUg -3'
miRNA:   3'- -CCACagugGCGGCUG-------UGCCACGGCCG- -5'
10327 5' -59.5 NC_002687.1 + 59414 0.69 0.823595
Target:  5'- aGGUGcCGUCGCuCGACAUcgucGUGUCGGCg -3'
miRNA:   3'- -CCACaGUGGCG-GCUGUGc---CACGGCCG- -5'
10327 5' -59.5 NC_002687.1 + 137808 0.69 0.838868
Target:  5'- --gGUCcUCGCCGAUguugACGGUGCCGa- -3'
miRNA:   3'- ccaCAGuGGCGGCUG----UGCCACGGCcg -5'
10327 5' -59.5 NC_002687.1 + 84675 0.68 0.846271
Target:  5'- --cGUCAUgGCCGuCGuCGGUGuuCCGGCc -3'
miRNA:   3'- ccaCAGUGgCGGCuGU-GCCAC--GGCCG- -5'
10327 5' -59.5 NC_002687.1 + 117958 0.69 0.838868
Target:  5'- cGGUGuUCAUCacacCCGGCGCgGGUGuaGGCg -3'
miRNA:   3'- -CCAC-AGUGGc---GGCUGUG-CCACggCCG- -5'
10327 5' -59.5 NC_002687.1 + 146136 0.68 0.846271
Target:  5'- aGGcgGcCAUCGCCGAgGCGGagGCCGuGUu -3'
miRNA:   3'- -CCa-CaGUGGCGGCUgUGCCa-CGGC-CG- -5'
10327 5' -59.5 NC_002687.1 + 135626 0.67 0.899259
Target:  5'- -cUGgcgUACCG-CGACGCGGUGCagCGGUu -3'
miRNA:   3'- ccACa--GUGGCgGCUGUGCCACG--GCCG- -5'
10327 5' -59.5 NC_002687.1 + 84914 0.67 0.905043
Target:  5'- aGGuUGUacagCACCGaCGGCACGacgaUGCCGGUg -3'
miRNA:   3'- -CC-ACA----GUGGCgGCUGUGCc---ACGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.