miRNA display CGI


Results 61 - 80 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10327 5' -59.5 NC_002687.1 + 76443 0.66 0.939558
Target:  5'- cGUGUCACacacgacacaGCgGAaACGGUcgucauucuggucGCCGGCg -3'
miRNA:   3'- cCACAGUGg---------CGgCUgUGCCA-------------CGGCCG- -5'
10327 5' -59.5 NC_002687.1 + 123658 0.66 0.939988
Target:  5'- --cGUCguaACCGCCGAUcgucuCGuagGCCGGCu -3'
miRNA:   3'- ccaCAG---UGGCGGCUGu----GCca-CGGCCG- -5'
10327 5' -59.5 NC_002687.1 + 146136 0.68 0.846271
Target:  5'- aGGcgGcCAUCGCCGAgGCGGagGCCGuGUu -3'
miRNA:   3'- -CCa-CaGUGGCGGCUgUGCCa-CGGC-CG- -5'
10327 5' -59.5 NC_002687.1 + 84675 0.68 0.846271
Target:  5'- --cGUCAUgGCCGuCGuCGGUGuuCCGGCc -3'
miRNA:   3'- ccaCAGUGgCGGCuGU-GCCAC--GGCCG- -5'
10327 5' -59.5 NC_002687.1 + 307628 0.73 0.619578
Target:  5'- uGGUGcuggCACgGgCGGCgGCGGUGCUGGUg -3'
miRNA:   3'- -CCACa---GUGgCgGCUG-UGCCACGGCCG- -5'
10327 5' -59.5 NC_002687.1 + 83678 0.72 0.647646
Target:  5'- cGGUGUCGCUaGCCGACG-GGaUGCCGu- -3'
miRNA:   3'- -CCACAGUGG-CGGCUGUgCC-ACGGCcg -5'
10327 5' -59.5 NC_002687.1 + 209449 0.72 0.65699
Target:  5'- cGGaGUCAgaGuCCGACGaaGUGCCGGCg -3'
miRNA:   3'- -CCaCAGUggC-GGCUGUgcCACGGCCG- -5'
10327 5' -59.5 NC_002687.1 + 61178 0.72 0.675621
Target:  5'- -cUGUCGCCGCuCGACGaGGgacUGCCGaGCg -3'
miRNA:   3'- ccACAGUGGCG-GCUGUgCC---ACGGC-CG- -5'
10327 5' -59.5 NC_002687.1 + 182376 0.72 0.684895
Target:  5'- --cGUCAUCGCCGAUA-GGUGuuGcGCg -3'
miRNA:   3'- ccaCAGUGGCGGCUGUgCCACggC-CG- -5'
10327 5' -59.5 NC_002687.1 + 133855 0.71 0.694133
Target:  5'- cGGUGUCAaaGaCGACGCuGUGCgCGGUa -3'
miRNA:   3'- -CCACAGUggCgGCUGUGcCACG-GCCG- -5'
10327 5' -59.5 NC_002687.1 + 118196 0.71 0.729683
Target:  5'- cGGUG-CAgCGCCugcgucgaacgagGACgACGGUGCCGcGCc -3'
miRNA:   3'- -CCACaGUgGCGG-------------CUG-UGCCACGGC-CG- -5'
10327 5' -59.5 NC_002687.1 + 279662 0.7 0.751933
Target:  5'- --cGUCAggguCCGCUGACucuucuggugggccgGUGGUGCCGGCa -3'
miRNA:   3'- ccaCAGU----GGCGGCUG---------------UGCCACGGCCG- -5'
10327 5' -59.5 NC_002687.1 + 72924 0.7 0.774487
Target:  5'- cGUGUgccgacgccgcCGCCGCCGACACaccGCCGaGCa -3'
miRNA:   3'- cCACA-----------GUGGCGGCUGUGccaCGGC-CG- -5'
10327 5' -59.5 NC_002687.1 + 300013 0.69 0.807741
Target:  5'- gGGUGUCGCCGCCGgggcacACACGaUGCg--- -3'
miRNA:   3'- -CCACAGUGGCGGC------UGUGCcACGgccg -5'
10327 5' -59.5 NC_002687.1 + 131613 0.69 0.807741
Target:  5'- gGGUaGUUAUCGCCucguGACGCGcUGuuGGCg -3'
miRNA:   3'- -CCA-CAGUGGCGG----CUGUGCcACggCCG- -5'
10327 5' -59.5 NC_002687.1 + 78112 0.69 0.815738
Target:  5'- uGGUGUUuCgGCCGugGCGGcgGCgucugaaaCGGCa -3'
miRNA:   3'- -CCACAGuGgCGGCugUGCCa-CG--------GCCG- -5'
10327 5' -59.5 NC_002687.1 + 316040 0.69 0.822816
Target:  5'- cGGUGg---UGCCGAUggugccgAUGGUGCCGGUg -3'
miRNA:   3'- -CCACagugGCGGCUG-------UGCCACGGCCG- -5'
10327 5' -59.5 NC_002687.1 + 59414 0.69 0.823595
Target:  5'- aGGUGcCGUCGCuCGACAUcgucGUGUCGGCg -3'
miRNA:   3'- -CCACaGUGGCG-GCUGUGc---CACGGCCG- -5'
10327 5' -59.5 NC_002687.1 + 137808 0.69 0.838868
Target:  5'- --gGUCcUCGCCGAUguugACGGUGCCGa- -3'
miRNA:   3'- ccaCAGuGGCGGCUG----UGCCACGGCcg -5'
10327 5' -59.5 NC_002687.1 + 117958 0.69 0.838868
Target:  5'- cGGUGuUCAUCacacCCGGCGCgGGUGuaGGCg -3'
miRNA:   3'- -CCAC-AGUGGc---GGCUGUG-CCACggCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.