miRNA display CGI


Results 21 - 40 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10327 5' -59.5 NC_002687.1 + 174237 0.68 0.853512
Target:  5'- cGGUGuUCACUGUuuCGAgAUGGUucgucuGCCGGUa -3'
miRNA:   3'- -CCAC-AGUGGCG--GCUgUGCCA------CGGCCG- -5'
10327 5' -59.5 NC_002687.1 + 164660 0.68 0.860585
Target:  5'- ---uUCAauGUCGACAugcCGGUGCCGGUg -3'
miRNA:   3'- ccacAGUggCGGCUGU---GCCACGGCCG- -5'
10327 5' -59.5 NC_002687.1 + 330943 0.66 0.926208
Target:  5'- cGUGa-AUCGCC-ACgACGGcUGCCGGCa -3'
miRNA:   3'- cCACagUGGCGGcUG-UGCC-ACGGCCG- -5'
10327 5' -59.5 NC_002687.1 + 76975 0.66 0.931001
Target:  5'- --cGUCGCCGCCaccgucuaGCACGaG-GCaCGGCa -3'
miRNA:   3'- ccaCAGUGGCGGc-------UGUGC-CaCG-GCCG- -5'
10327 5' -59.5 NC_002687.1 + 80686 0.66 0.938691
Target:  5'- aGGUagcGUCGCUGaacuCCGACcgagucauguacguGcCGGUGUCGGCa -3'
miRNA:   3'- -CCA---CAGUGGC----GGCUG--------------U-GCCACGGCCG- -5'
10327 5' -59.5 NC_002687.1 + 76443 0.66 0.939558
Target:  5'- cGUGUCACacacgacacaGCgGAaACGGUcgucauucuggucGCCGGCg -3'
miRNA:   3'- cCACAGUGg---------CGgCUgUGCCA-------------CGGCCG- -5'
10327 5' -59.5 NC_002687.1 + 123658 0.66 0.939988
Target:  5'- --cGUCguaACCGCCGAUcgucuCGuagGCCGGCu -3'
miRNA:   3'- ccaCAG---UGGCGGCUGu----GCca-CGGCCG- -5'
10327 5' -59.5 NC_002687.1 + 220928 0.66 0.944184
Target:  5'- cGUGaUguCCGCUGACcCGG-GCCaGGCc -3'
miRNA:   3'- cCAC-AguGGCGGCUGuGCCaCGG-CCG- -5'
10327 5' -59.5 NC_002687.1 + 195337 0.66 0.944184
Target:  5'- cGUGaUguCCGCUGACcCGG-GCCaGGCc -3'
miRNA:   3'- cCAC-AguGGCGGCUGuGCCaCGG-CCG- -5'
10327 5' -59.5 NC_002687.1 + 19502 0.66 0.944184
Target:  5'- cGUGaUguCCGCUGACcCGG-GCCaGGCc -3'
miRNA:   3'- cCAC-AguGGCGGCUGuGCCaCGG-CCG- -5'
10327 5' -59.5 NC_002687.1 + 127853 0.66 0.926208
Target:  5'- uGGUGUCugCGaCGACGa--UGUCGGUg -3'
miRNA:   3'- -CCACAGugGCgGCUGUgccACGGCCG- -5'
10327 5' -59.5 NC_002687.1 + 254708 0.67 0.912812
Target:  5'- --gGUCACCGCCGACcacagcaugucaaacACGcGUuCgGGCa -3'
miRNA:   3'- ccaCAGUGGCGGCUG---------------UGC-CAcGgCCG- -5'
10327 5' -59.5 NC_002687.1 + 18616 0.68 0.880752
Target:  5'- aGUGUgggaccagaaGCUGCCGcCACGGgguucGCCGGUg -3'
miRNA:   3'- cCACAg---------UGGCGGCuGUGCCa----CGGCCG- -5'
10327 5' -59.5 NC_002687.1 + 215347 0.68 0.880752
Target:  5'- -aUGUCGCCGCCcu--CGGccccGCCGGUg -3'
miRNA:   3'- ccACAGUGGCGGcuguGCCa---CGGCCG- -5'
10327 5' -59.5 NC_002687.1 + 137350 0.67 0.88711
Target:  5'- -cUGUCGgCGUCGAagACGG-GCUGGCc -3'
miRNA:   3'- ccACAGUgGCGGCUg-UGCCaCGGCCG- -5'
10327 5' -59.5 NC_002687.1 + 98168 0.67 0.899259
Target:  5'- aGUGccagCGgUGCCGA--UGGUGCCGGUg -3'
miRNA:   3'- cCACa---GUgGCGGCUguGCCACGGCCG- -5'
10327 5' -59.5 NC_002687.1 + 135626 0.67 0.899259
Target:  5'- -cUGgcgUACCG-CGACGCGGUGCagCGGUu -3'
miRNA:   3'- ccACa--GUGGCgGCUGUGCCACG--GCCG- -5'
10327 5' -59.5 NC_002687.1 + 84914 0.67 0.905043
Target:  5'- aGGuUGUacagCACCGaCGGCACGacgaUGCCGGUg -3'
miRNA:   3'- -CC-ACA----GUGGCgGCUGUGCc---ACGGCCG- -5'
10327 5' -59.5 NC_002687.1 + 170163 0.67 0.905043
Target:  5'- cGUGUCGaCGUcggcgucggccaCGACACGGUGgacCUGGCg -3'
miRNA:   3'- cCACAGUgGCG------------GCUGUGCCAC---GGCCG- -5'
10327 5' -59.5 NC_002687.1 + 125515 0.67 0.905043
Target:  5'- uGUGUgcuuCCGUucauCGACACGGacuccGCCGGCu -3'
miRNA:   3'- cCACAgu--GGCG----GCUGUGCCa----CGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.