miRNA display CGI


Results 41 - 60 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10327 5' -59.5 NC_002687.1 + 125515 0.67 0.905043
Target:  5'- uGUGUgcuuCCGUucauCGACACGGacuccGCCGGCu -3'
miRNA:   3'- cCACAgu--GGCG----GCUGUGCCa----CGGCCG- -5'
10327 5' -59.5 NC_002687.1 + 97624 0.7 0.765891
Target:  5'- aGUGaUgACgUGCCGGCACcGUGUCGGCg -3'
miRNA:   3'- cCAC-AgUG-GCGGCUGUGcCACGGCCG- -5'
10327 5' -59.5 NC_002687.1 + 281942 0.7 0.791354
Target:  5'- --gGUCGCgGCaggagcaGGgGCGGUGCCGGg -3'
miRNA:   3'- ccaCAGUGgCGg------CUgUGCCACGGCCg -5'
10327 5' -59.5 NC_002687.1 + 257952 0.69 0.807741
Target:  5'- uGGUGUCugacAUgGUCGACAUGGUcaaCGGCa -3'
miRNA:   3'- -CCACAG----UGgCGGCUGUGCCAcg-GCCG- -5'
10327 5' -59.5 NC_002687.1 + 97818 0.69 0.815738
Target:  5'- --cGgCACCGCUGGCAC--UGCUGGCa -3'
miRNA:   3'- ccaCaGUGGCGGCUGUGccACGGCCG- -5'
10327 5' -59.5 NC_002687.1 + 224140 0.69 0.815738
Target:  5'- cGGUGgcggUGgCGCUGGCGCuGGcGCUGGCg -3'
miRNA:   3'- -CCACa---GUgGCGGCUGUG-CCaCGGCCG- -5'
10327 5' -59.5 NC_002687.1 + 256207 0.69 0.831307
Target:  5'- --cGUCGaaagUGCCGACACgGGUGCgcaGGCg -3'
miRNA:   3'- ccaCAGUg---GCGGCUGUG-CCACGg--CCG- -5'
10327 5' -59.5 NC_002687.1 + 57347 0.69 0.836616
Target:  5'- cGGUGUCcgugcGCCGCCGAaugguuucaaGGUGUacuauaaCGGCa -3'
miRNA:   3'- -CCACAG-----UGGCGGCUgug-------CCACG-------GCCG- -5'
10327 5' -59.5 NC_002687.1 + 204575 0.68 0.853512
Target:  5'- uGUGUCA-UGCCGAaGCGGUGUCGa- -3'
miRNA:   3'- cCACAGUgGCGGCUgUGCCACGGCcg -5'
10327 5' -59.5 NC_002687.1 + 226933 0.71 0.739534
Target:  5'- gGGcGUCGCCccGUCGGCuccguCGGcUGCCGGUg -3'
miRNA:   3'- -CCaCAGUGG--CGGCUGu----GCC-ACGGCCG- -5'
10327 5' -59.5 NC_002687.1 + 23710 0.71 0.730582
Target:  5'- ---cUCACCGCCGACGCcccuCCGGCa -3'
miRNA:   3'- ccacAGUGGCGGCUGUGccacGGCCG- -5'
10327 5' -59.5 NC_002687.1 + 83375 0.71 0.71156
Target:  5'- gGGUGUCGCCGaCGACACcGUcggaaccuacaccGUCGGUg -3'
miRNA:   3'- -CCACAGUGGCgGCUGUGcCA-------------CGGCCG- -5'
10327 5' -59.5 NC_002687.1 + 204175 0.66 0.935144
Target:  5'- cGG-GUCGCauaucagCGCgGGgGCGGUGCCGaacaGCa -3'
miRNA:   3'- -CCaCAGUG-------GCGgCUgUGCCACGGC----CG- -5'
10327 5' -59.5 NC_002687.1 + 89709 0.77 0.408359
Target:  5'- cGGUGUCuCCGCCGAgGuCGGUGUCGuCg -3'
miRNA:   3'- -CCACAGuGGCGGCUgU-GCCACGGCcG- -5'
10327 5' -59.5 NC_002687.1 + 27192 0.76 0.43248
Target:  5'- --cGUCGCCcCCGACACGGUcGCUGaGCg -3'
miRNA:   3'- ccaCAGUGGcGGCUGUGCCA-CGGC-CG- -5'
10327 5' -59.5 NC_002687.1 + 226789 0.75 0.483092
Target:  5'- uGGUGcCGgUGCCGguGC-CGGUGCCGGUg -3'
miRNA:   3'- -CCACaGUgGCGGC--UGuGCCACGGCCG- -5'
10327 5' -59.5 NC_002687.1 + 212344 0.75 0.518367
Target:  5'- cGGgcucGcCACCGUCGACAgCGGUGgUGGCa -3'
miRNA:   3'- -CCa---CaGUGGCGGCUGU-GCCACgGCCG- -5'
10327 5' -59.5 NC_002687.1 + 155142 0.74 0.545478
Target:  5'- uGGcGUaCGCCGaCGACGCGGUGUcuaCGGCg -3'
miRNA:   3'- -CCaCA-GUGGCgGCUGUGCCACG---GCCG- -5'
10327 5' -59.5 NC_002687.1 + 65042 0.72 0.647646
Target:  5'- ----aCAUgGCCGACGCGGUGCUaGGUg -3'
miRNA:   3'- ccacaGUGgCGGCUGUGCCACGG-CCG- -5'
10327 5' -59.5 NC_002687.1 + 239838 0.71 0.694133
Target:  5'- --gGUCcgGCCGCCGcgGCGGaUGCUGGCa -3'
miRNA:   3'- ccaCAG--UGGCGGCugUGCC-ACGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.