Results 81 - 84 of 84 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10327 | 5' | -59.5 | NC_002687.1 | + | 97818 | 0.69 | 0.815738 |
Target: 5'- --cGgCACCGCUGGCAC--UGCUGGCa -3' miRNA: 3'- ccaCaGUGGCGGCUGUGccACGGCCG- -5' |
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10327 | 5' | -59.5 | NC_002687.1 | + | 257952 | 0.69 | 0.807741 |
Target: 5'- uGGUGUCugacAUgGUCGACAUGGUcaaCGGCa -3' miRNA: 3'- -CCACAG----UGgCGGCUGUGCCAcg-GCCG- -5' |
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10327 | 5' | -59.5 | NC_002687.1 | + | 281942 | 0.7 | 0.791354 |
Target: 5'- --gGUCGCgGCaggagcaGGgGCGGUGCCGGg -3' miRNA: 3'- ccaCAGUGgCGg------CUgUGCCACGGCCg -5' |
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10327 | 5' | -59.5 | NC_002687.1 | + | 224848 | 0.8 | 0.282534 |
Target: 5'- cGGaga-GCCGCCGACGCGGcggcGCCGGCa -3' miRNA: 3'- -CCacagUGGCGGCUGUGCCa---CGGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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