miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10328 3' -53.2 NC_002687.1 + 65574 0.66 0.996791
Target:  5'- uGUGGGcgGCacaugaugCCGUGCCGUcgCCGGUGUCc -3'
miRNA:   3'- gCACUC--UG--------GGCACGGCA--GGUUAUAGc -5'
10328 3' -53.2 NC_002687.1 + 55562 0.67 0.996269
Target:  5'- gGUGAuuacACCgGUGCCGUaCCAGUuuaugGUCGc -3'
miRNA:   3'- gCACUc---UGGgCACGGCA-GGUUA-----UAGC- -5'
10328 3' -53.2 NC_002687.1 + 168090 0.67 0.996269
Target:  5'- cCGUGuccAGACCCGUcGUC-UCCA-UGUCGa -3'
miRNA:   3'- -GCAC---UCUGGGCA-CGGcAGGUuAUAGC- -5'
10328 3' -53.2 NC_002687.1 + 87465 0.67 0.996269
Target:  5'- gCGUGGGACCgGUGUgGuUCCAu--UCu -3'
miRNA:   3'- -GCACUCUGGgCACGgC-AGGUuauAGc -5'
10328 3' -53.2 NC_002687.1 + 138244 0.67 0.996269
Target:  5'- ---aAGGCCCGUGC-GUCCGuUAUCu -3'
miRNA:   3'- gcacUCUGGGCACGgCAGGUuAUAGc -5'
10328 3' -53.2 NC_002687.1 + 70451 0.67 0.995678
Target:  5'- uGUGGGACCacgaCGUGCaacuuUCCAAUAUUa -3'
miRNA:   3'- gCACUCUGG----GCACGgc---AGGUUAUAGc -5'
10328 3' -53.2 NC_002687.1 + 92817 0.67 0.994267
Target:  5'- --aGAGcAUCCGUGaCCGacaCCGGUAUCGg -3'
miRNA:   3'- gcaCUC-UGGGCAC-GGCa--GGUUAUAGC- -5'
10328 3' -53.2 NC_002687.1 + 254788 0.67 0.994267
Target:  5'- ---cGGGCCUGUGgCGUCgGGUAUCa -3'
miRNA:   3'- gcacUCUGGGCACgGCAGgUUAUAGc -5'
10328 3' -53.2 NC_002687.1 + 85303 0.67 0.993434
Target:  5'- cCGUGGGuCCCGUGggucCCGUCgGucccGUCGg -3'
miRNA:   3'- -GCACUCuGGGCAC----GGCAGgUua--UAGC- -5'
10328 3' -53.2 NC_002687.1 + 64061 0.68 0.991478
Target:  5'- aCGUgGAGAgCCGUGCUG-CCGucuAUGUCc -3'
miRNA:   3'- -GCA-CUCUgGGCACGGCaGGU---UAUAGc -5'
10328 3' -53.2 NC_002687.1 + 181691 0.68 0.990341
Target:  5'- aGUGGGACgaGUGCCGaUgCGAUGUgGa -3'
miRNA:   3'- gCACUCUGggCACGGC-AgGUUAUAgC- -5'
10328 3' -53.2 NC_002687.1 + 226787 0.69 0.984562
Target:  5'- gGUGGuGCCgGUGCCGgugCCGGUGcCGg -3'
miRNA:   3'- gCACUcUGGgCACGGCa--GGUUAUaGC- -5'
10328 3' -53.2 NC_002687.1 + 329732 0.69 0.980832
Target:  5'- uCGU-AGACCCGcUGCCGUCguAUA-CGa -3'
miRNA:   3'- -GCAcUCUGGGC-ACGGCAGguUAUaGC- -5'
10328 3' -53.2 NC_002687.1 + 101060 1.09 0.014222
Target:  5'- uCGUGAGACCCGUGCCGUCCAAUAUCGu -3'
miRNA:   3'- -GCACUCUGGGCACGGCAGGUUAUAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.