miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10328 5' -59.8 NC_002687.1 + 85392 0.66 0.92758
Target:  5'- aCCG-CGGggGAcGGCaaauccaagGGCGCCGGUGc -3'
miRNA:   3'- cGGCuGCCa-CUuCCG---------CCGUGGCCACa -5'
10328 5' -59.8 NC_002687.1 + 21883 0.66 0.922609
Target:  5'- aGCCGAaaaaaagccagGGUGggGGUGGUGCCuGUc- -3'
miRNA:   3'- -CGGCUg----------CCACuuCCGCCGUGGcCAca -5'
10328 5' -59.8 NC_002687.1 + 10499 0.66 0.922609
Target:  5'- uGCUggGACGGgaacgGGAGcCGGguCCGGUGg -3'
miRNA:   3'- -CGG--CUGCCa----CUUCcGCCguGGCCACa -5'
10328 5' -59.8 NC_002687.1 + 135208 0.66 0.917436
Target:  5'- -aCGACGGcGAuacagaGGUACCGGUGUg -3'
miRNA:   3'- cgGCUGCCaCUuccg--CCGUGGCCACA- -5'
10328 5' -59.8 NC_002687.1 + 298901 0.66 0.911512
Target:  5'- cCCGAcuugcguCGGUGGcuGUGGCugUGGUGg -3'
miRNA:   3'- cGGCU-------GCCACUucCGCCGugGCCACa -5'
10328 5' -59.8 NC_002687.1 + 158832 0.66 0.906484
Target:  5'- cGCCGcCGGUcgaaagcccGGAGGCGGCgGCCGu--- -3'
miRNA:   3'- -CGGCuGCCA---------CUUCCGCCG-UGGCcaca -5'
10328 5' -59.8 NC_002687.1 + 308431 0.66 0.906484
Target:  5'- cCCGGCGGgGcGGGCGcGCccccucCCGGUGa -3'
miRNA:   3'- cGGCUGCCaCuUCCGC-CGu-----GGCCACa -5'
10328 5' -59.8 NC_002687.1 + 175103 0.66 0.906484
Target:  5'- uCCGGCGGUuccGGCGGUuCCGGcgGUu -3'
miRNA:   3'- cGGCUGCCAcuuCCGCCGuGGCCa-CA- -5'
10328 5' -59.8 NC_002687.1 + 276056 0.66 0.906484
Target:  5'- uGCCGAUcuggagGGaGAGGGCGGCAacaaagacUCGuGUGUg -3'
miRNA:   3'- -CGGCUG------CCaCUUCCGCCGU--------GGC-CACA- -5'
10328 5' -59.8 NC_002687.1 + 56869 0.66 0.900709
Target:  5'- cGCCuGCGcGUGuaugccGCGGCGCCGGUu- -3'
miRNA:   3'- -CGGcUGC-CACuuc---CGCCGUGGCCAca -5'
10328 5' -59.8 NC_002687.1 + 36178 0.67 0.88857
Target:  5'- gGuuGACGGaGAgGGGCGcGCACuCGGaUGUa -3'
miRNA:   3'- -CggCUGCCaCU-UCCGC-CGUG-GCC-ACA- -5'
10328 5' -59.8 NC_002687.1 + 307717 0.67 0.88857
Target:  5'- cGCCGACagcgauGGUGAcGGCaucaacgaaGGCAgUGGUGa -3'
miRNA:   3'- -CGGCUG------CCACUuCCG---------CCGUgGCCACa -5'
10328 5' -59.8 NC_002687.1 + 68040 0.67 0.882212
Target:  5'- --gGACGGUGA---CGGCACCGG-GUg -3'
miRNA:   3'- cggCUGCCACUuccGCCGUGGCCaCA- -5'
10328 5' -59.8 NC_002687.1 + 213424 0.67 0.862024
Target:  5'- aUCGACcGUGAGcacGGCGGCAUUGGUa- -3'
miRNA:   3'- cGGCUGcCACUU---CCGCCGUGGCCAca -5'
10328 5' -59.8 NC_002687.1 + 224095 0.68 0.857792
Target:  5'- uGCUGgcggacguucgggacGCGGUGgcGGUGGCGCUGGn-- -3'
miRNA:   3'- -CGGC---------------UGCCACuuCCGCCGUGGCCaca -5'
10328 5' -59.8 NC_002687.1 + 307796 0.68 0.854937
Target:  5'- -aCGGCGGUGAcGGCaGCGauGGUGa -3'
miRNA:   3'- cgGCUGCCACUuCCGcCGUggCCACa -5'
10328 5' -59.8 NC_002687.1 + 107524 0.68 0.852777
Target:  5'- gGCCGACGGcgauggccuacgcaUGAacguucccaucaAGGUGGCucUCGGUGg -3'
miRNA:   3'- -CGGCUGCC--------------ACU------------UCCGCCGu-GGCCACa -5'
10328 5' -59.8 NC_002687.1 + 83354 0.68 0.847679
Target:  5'- cGCa-ACGGUGAAGGUGaGCGagGGUGUc -3'
miRNA:   3'- -CGgcUGCCACUUCCGC-CGUggCCACA- -5'
10328 5' -59.8 NC_002687.1 + 280952 0.68 0.832671
Target:  5'- cGUCGGCGGgggccugGguGGCGGCAgCGGcGg -3'
miRNA:   3'- -CGGCUGCCa------CuuCCGCCGUgGCCaCa -5'
10328 5' -59.8 NC_002687.1 + 48150 0.68 0.817046
Target:  5'- uGCCGACuGGggGGAcagccuccGGUGGCGCaGGUGUg -3'
miRNA:   3'- -CGGCUG-CCa-CUU--------CCGCCGUGgCCACA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.