miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10329 3' -50.7 NC_002687.1 + 333596 0.66 0.999734
Target:  5'- gUGGGGCAAga-GUCaAAAACGCCg- -3'
miRNA:   3'- gACCUCGUUacgUAGcUUUUGCGGgu -5'
10329 3' -50.7 NC_002687.1 + 62136 0.66 0.999734
Target:  5'- -cGGAaacuuGCAgaAUGCcgCGAGGACGgCCGa -3'
miRNA:   3'- gaCCU-----CGU--UACGuaGCUUUUGCgGGU- -5'
10329 3' -50.7 NC_002687.1 + 254576 0.66 0.999734
Target:  5'- uCUGGAGCucuUGa--CGAucGCGUCCAa -3'
miRNA:   3'- -GACCUCGuu-ACguaGCUuuUGCGGGU- -5'
10329 3' -50.7 NC_002687.1 + 42308 0.66 0.999728
Target:  5'- uUGGAGgGAUG-GUCGGucgcagcGGACGUCCAc -3'
miRNA:   3'- gACCUCgUUACgUAGCU-------UUUGCGGGU- -5'
10329 3' -50.7 NC_002687.1 + 24105 0.66 0.999667
Target:  5'- gUGGAGUaAAUGCAcucauUUGAAAcuGCGCCa- -3'
miRNA:   3'- gACCUCG-UUACGU-----AGCUUU--UGCGGgu -5'
10329 3' -50.7 NC_002687.1 + 315792 0.66 0.999667
Target:  5'- -cGGA-CGAcGUGUCGGAGAUGUCCAu -3'
miRNA:   3'- gaCCUcGUUaCGUAGCUUUUGCGGGU- -5'
10329 3' -50.7 NC_002687.1 + 151142 0.66 0.999667
Target:  5'- cCUGGAGUAugugaGCAagcgCGAAAACGaCCGg -3'
miRNA:   3'- -GACCUCGUua---CGUa---GCUUUUGCgGGU- -5'
10329 3' -50.7 NC_002687.1 + 131751 0.66 0.999487
Target:  5'- -aGGAuuGAgucggGCAUCGAcaauGCGCCCGg -3'
miRNA:   3'- gaCCUcgUUa----CGUAGCUuu--UGCGGGU- -5'
10329 3' -50.7 NC_002687.1 + 3042 0.66 0.999419
Target:  5'- gUGGAGCGcaauuacacaaaCAUCGAcAACGCCUAc -3'
miRNA:   3'- gACCUCGUuac---------GUAGCUuUUGCGGGU- -5'
10329 3' -50.7 NC_002687.1 + 121651 0.66 0.999369
Target:  5'- uUGGcGCAAUGCGUCuuccuCGCCUu -3'
miRNA:   3'- gACCuCGUUACGUAGcuuuuGCGGGu -5'
10329 3' -50.7 NC_002687.1 + 293366 0.67 0.999228
Target:  5'- -cGGccGGCAGUGuCAUCGGcaGAGCGCgCGc -3'
miRNA:   3'- gaCC--UCGUUAC-GUAGCU--UUUGCGgGU- -5'
10329 3' -50.7 NC_002687.1 + 251153 0.67 0.999061
Target:  5'- uUGGAGCAgacGUGCAUCaaGAuGAUGUCUc -3'
miRNA:   3'- gACCUCGU---UACGUAG--CUuUUGCGGGu -5'
10329 3' -50.7 NC_002687.1 + 153082 0.67 0.998947
Target:  5'- cCUGGAGUgacGAUGCGaaggccuucagcgugUCGuuGGCGCCg- -3'
miRNA:   3'- -GACCUCG---UUACGU---------------AGCuuUUGCGGgu -5'
10329 3' -50.7 NC_002687.1 + 264624 0.67 0.998865
Target:  5'- uUGGAGCGAga-GUCGAGGAC-CUCGa -3'
miRNA:   3'- gACCUCGUUacgUAGCUUUUGcGGGU- -5'
10329 3' -50.7 NC_002687.1 + 117571 0.67 0.998865
Target:  5'- -cGGAGCAccgGCGaUGgcGACGCCUAc -3'
miRNA:   3'- gaCCUCGUua-CGUaGCuuUUGCGGGU- -5'
10329 3' -50.7 NC_002687.1 + 213883 0.67 0.998634
Target:  5'- -cGGGGUcuuuucugAGUGCAUCGu--ACGCCUc -3'
miRNA:   3'- gaCCUCG--------UUACGUAGCuuuUGCGGGu -5'
10329 3' -50.7 NC_002687.1 + 331810 0.67 0.998364
Target:  5'- -cGGAGcCAGUGUcgCGGAAACggaGCUCGa -3'
miRNA:   3'- gaCCUC-GUUACGuaGCUUUUG---CGGGU- -5'
10329 3' -50.7 NC_002687.1 + 235133 0.68 0.998051
Target:  5'- -aGGAGUugGAUGCaAUCGAGAAaGCUCGc -3'
miRNA:   3'- gaCCUCG--UUACG-UAGCUUUUgCGGGU- -5'
10329 3' -50.7 NC_002687.1 + 290236 0.68 0.998051
Target:  5'- aUGGGGCGcagGUG-AUUGAAAcagaggcuaACGCCCAg -3'
miRNA:   3'- gACCUCGU---UACgUAGCUUU---------UGCGGGU- -5'
10329 3' -50.7 NC_002687.1 + 200812 0.68 0.996993
Target:  5'- -cGGAGCGAuuUGCGUCugcaccgaggcgcacGAGGGCGCgCAc -3'
miRNA:   3'- gaCCUCGUU--ACGUAG---------------CUUUUGCGgGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.