miRNA display CGI


Results 21 - 40 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10329 3' -50.7 NC_002687.1 + 118226 0.68 0.996993
Target:  5'- -cGGuGCAGcgccUGCGUCGAAcgaggacgacggugcAGCGCCUg -3'
miRNA:   3'- gaCCuCGUU----ACGUAGCUU---------------UUGCGGGu -5'
10329 3' -50.7 NC_002687.1 + 308614 0.68 0.996795
Target:  5'- uCUGGGGUggUGaggggCGGAGccCGCCCAg -3'
miRNA:   3'- -GACCUCGuuACgua--GCUUUu-GCGGGU- -5'
10329 3' -50.7 NC_002687.1 + 124708 0.68 0.996795
Target:  5'- -aGaGGGCAG-GCGUCGAGaAACGCCa- -3'
miRNA:   3'- gaC-CUCGUUaCGUAGCUU-UUGCGGgu -5'
10329 3' -50.7 NC_002687.1 + 277220 0.68 0.996251
Target:  5'- -cGGuGUGAUGCGUCGAc-AUGCCUg -3'
miRNA:   3'- gaCCuCGUUACGUAGCUuuUGCGGGu -5'
10329 3' -50.7 NC_002687.1 + 217359 0.69 0.995633
Target:  5'- uCUGGAGCGGUGCGaUGu--AUGCCa- -3'
miRNA:   3'- -GACCUCGUUACGUaGCuuuUGCGGgu -5'
10329 3' -50.7 NC_002687.1 + 221366 0.69 0.994148
Target:  5'- -gGGGGCGGUGUucaucuacAUCGAcaugaAGACGCUCGg -3'
miRNA:   3'- gaCCUCGUUACG--------UAGCU-----UUUGCGGGU- -5'
10329 3' -50.7 NC_002687.1 + 295342 0.69 0.994148
Target:  5'- uCUGGAGCGAguaucaccacGCGUgCGAGucCGCCUAc -3'
miRNA:   3'- -GACCUCGUUa---------CGUA-GCUUuuGCGGGU- -5'
10329 3' -50.7 NC_002687.1 + 19940 0.69 0.994148
Target:  5'- -gGGGGCGGUGUucaucuacAUCGAcaugaAGACGCUCGg -3'
miRNA:   3'- gaCCUCGUUACG--------UAGCU-----UUUGCGGGU- -5'
10329 3' -50.7 NC_002687.1 + 195775 0.69 0.994148
Target:  5'- -gGGGGCGGUGUucaucuacAUCGAcaugaAGACGCUCGg -3'
miRNA:   3'- gaCCUCGUUACG--------UAGCU-----UUUGCGGGU- -5'
10329 3' -50.7 NC_002687.1 + 275368 0.69 0.992281
Target:  5'- -cGGcAGCGA-GCAUCaAAGGCGUCCAg -3'
miRNA:   3'- gaCC-UCGUUaCGUAGcUUUUGCGGGU- -5'
10329 3' -50.7 NC_002687.1 + 319616 0.7 0.989968
Target:  5'- cCUGGAauucuGCAgGUGUGUCGGGAGCGUUCGc -3'
miRNA:   3'- -GACCU-----CGU-UACGUAGCUUUUGCGGGU- -5'
10329 3' -50.7 NC_002687.1 + 225013 0.7 0.985523
Target:  5'- gCUGGAGCGGgugGUggCGugGGCGUCCGa -3'
miRNA:   3'- -GACCUCGUUa--CGuaGCuuUUGCGGGU- -5'
10329 3' -50.7 NC_002687.1 + 255179 0.7 0.985523
Target:  5'- gCUGGcguGguAUGCcUCGAGGGCGUCCu -3'
miRNA:   3'- -GACCu--CguUACGuAGCUUUUGCGGGu -5'
10329 3' -50.7 NC_002687.1 + 118052 0.71 0.983748
Target:  5'- -gGGAGCuac-CAUCGggGGCGCCa- -3'
miRNA:   3'- gaCCUCGuuacGUAGCuuUUGCGGgu -5'
10329 3' -50.7 NC_002687.1 + 206014 0.71 0.977432
Target:  5'- -cGGAGCGuuucCAUCGAcGACGCUCAc -3'
miRNA:   3'- gaCCUCGUuac-GUAGCUuUUGCGGGU- -5'
10329 3' -50.7 NC_002687.1 + 39258 0.71 0.972319
Target:  5'- -aGGAGaguauccgGCAUCGAuucGCGCCCAc -3'
miRNA:   3'- gaCCUCguua----CGUAGCUuu-UGCGGGU- -5'
10329 3' -50.7 NC_002687.1 + 261087 0.72 0.96947
Target:  5'- -cGGGGgGAaGCgcuaGUCGGAGACGCCCu -3'
miRNA:   3'- gaCCUCgUUaCG----UAGCUUUUGCGGGu -5'
10329 3' -50.7 NC_002687.1 + 141241 0.73 0.934093
Target:  5'- -cGGAGCAcgGCcgCGucGACGUCCu -3'
miRNA:   3'- gaCCUCGUuaCGuaGCuuUUGCGGGu -5'
10329 3' -50.7 NC_002687.1 + 124953 0.74 0.912352
Target:  5'- ---cAGCAGUGUGUUGGAGACGUCCAa -3'
miRNA:   3'- gaccUCGUUACGUAGCUUUUGCGGGU- -5'
10329 3' -50.7 NC_002687.1 + 149390 0.75 0.886869
Target:  5'- -cGGAGCGGacacGUGUCGAGAACGCCa- -3'
miRNA:   3'- gaCCUCGUUa---CGUAGCUUUUGCGGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.