miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10329 5' -57.7 NC_002687.1 + 101628 0.66 0.95325
Target:  5'- --cGUCCAUGUaGGCUcgacgcgUCGCUUGgucgaacauUCCCa -3'
miRNA:   3'- uaaCGGGUACG-CCGG-------AGCGAAC---------AGGG- -5'
10329 5' -57.7 NC_002687.1 + 85335 0.66 0.949754
Target:  5'- --gGuCCCAU-CGGUCcCGCggGUCCCg -3'
miRNA:   3'- uaaC-GGGUAcGCCGGaGCGaaCAGGG- -5'
10329 5' -57.7 NC_002687.1 + 182070 0.66 0.932144
Target:  5'- cGUUGCCCAUGUccucGGCggUCGCg---CCCg -3'
miRNA:   3'- -UAACGGGUACG----CCGg-AGCGaacaGGG- -5'
10329 5' -57.7 NC_002687.1 + 85494 0.67 0.911087
Target:  5'- --gGUgCAcGCGGCCUCccuggacccGCUgGUCCCg -3'
miRNA:   3'- uaaCGgGUaCGCCGGAG---------CGAaCAGGG- -5'
10329 5' -57.7 NC_002687.1 + 95994 0.67 0.905285
Target:  5'- cUUGCUCAUGcCGGCggCUUGUuugUUGUCCUu -3'
miRNA:   3'- uAACGGGUAC-GCCG--GAGCG---AACAGGG- -5'
10329 5' -57.7 NC_002687.1 + 85698 0.68 0.893047
Target:  5'- --gGCCCGUcUGGCCcCGCUgGcCCCa -3'
miRNA:   3'- uaaCGGGUAcGCCGGaGCGAaCaGGG- -5'
10329 5' -57.7 NC_002687.1 + 141075 0.68 0.886616
Target:  5'- --aGUCCuugGCGGCCagcauggcCGCcUGUCCCu -3'
miRNA:   3'- uaaCGGGua-CGCCGGa-------GCGaACAGGG- -5'
10329 5' -57.7 NC_002687.1 + 297667 0.68 0.873148
Target:  5'- -cUGCUC--GCGcGCCUCuGCgUGUCCCg -3'
miRNA:   3'- uaACGGGuaCGC-CGGAG-CGaACAGGG- -5'
10329 5' -57.7 NC_002687.1 + 30199 0.68 0.858899
Target:  5'- ---aUCCGUGCGGCCU-GCUUGcaUCCa -3'
miRNA:   3'- uaacGGGUACGCCGGAgCGAAC--AGGg -5'
10329 5' -57.7 NC_002687.1 + 25188 0.69 0.836149
Target:  5'- --gGCCCGUucGCGuGUCUCGgUUGUgCCa -3'
miRNA:   3'- uaaCGGGUA--CGC-CGGAGCgAACAgGG- -5'
10329 5' -57.7 NC_002687.1 + 85281 0.69 0.828221
Target:  5'- --gGCCCAcaaGGCCUCcCUgGUCCCg -3'
miRNA:   3'- uaaCGGGUacgCCGGAGcGAaCAGGG- -5'
10329 5' -57.7 NC_002687.1 + 40802 0.69 0.820133
Target:  5'- --aGCCCGUucGCGuGUCUCGgUUGUgCCa -3'
miRNA:   3'- uaaCGGGUA--CGC-CGGAGCgAACAgGG- -5'
10329 5' -57.7 NC_002687.1 + 107701 1.1 0.003407
Target:  5'- cAUUGCCCAUGCGGCCUCGCUUGUCCCa -3'
miRNA:   3'- -UAACGGGUACGCCGGAGCGAACAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.