miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1033 3' -49.4 NC_000924.1 + 33923 0.66 0.966641
Target:  5'- gGCCGGUAUGaGcCCACAC-CGUUAC-Cg -3'
miRNA:   3'- -CGGCUAUGUaC-GGUGUGcGUAAUGaG- -5'
1033 3' -49.4 NC_000924.1 + 51215 0.66 0.966641
Target:  5'- uGCCGucgGCGcguUGCCACGgGCAagGCg- -3'
miRNA:   3'- -CGGCua-UGU---ACGGUGUgCGUaaUGag -5'
1033 3' -49.4 NC_000924.1 + 49964 0.66 0.954826
Target:  5'- uGCCGAUGagGUG-CGCGCGCA--GCUg -3'
miRNA:   3'- -CGGCUAUg-UACgGUGUGCGUaaUGAg -5'
1033 3' -49.4 NC_000924.1 + 42714 0.66 0.954826
Target:  5'- uGCUGAUGCAgugcugguUGCCACgACGCcgggGCa- -3'
miRNA:   3'- -CGGCUAUGU--------ACGGUG-UGCGuaa-UGag -5'
1033 3' -49.4 NC_000924.1 + 36365 0.66 0.954826
Target:  5'- aGCCGGUGCAUGUUGacaGCGCGa----- -3'
miRNA:   3'- -CGGCUAUGUACGGUg--UGCGUaaugag -5'
1033 3' -49.4 NC_000924.1 + 7408 0.67 0.929404
Target:  5'- uCCGGUACAUGgUugAaacCAUUGCUCa -3'
miRNA:   3'- cGGCUAUGUACgGugUgc-GUAAUGAG- -5'
1033 3' -49.4 NC_000924.1 + 24711 0.68 0.923429
Target:  5'- gGCCGGUAUcuucacUGCCACAgGgCGUUGCc- -3'
miRNA:   3'- -CGGCUAUGu-----ACGGUGUgC-GUAAUGag -5'
1033 3' -49.4 NC_000924.1 + 44111 0.68 0.910581
Target:  5'- gGCCGAUGuCAUG-UACACGCAUg---- -3'
miRNA:   3'- -CGGCUAU-GUACgGUGUGCGUAaugag -5'
1033 3' -49.4 NC_000924.1 + 19917 0.68 0.903713
Target:  5'- uGCUGGU---UGCaCAcCACGCAUUGCUUg -3'
miRNA:   3'- -CGGCUAuguACG-GU-GUGCGUAAUGAG- -5'
1033 3' -49.4 NC_000924.1 + 14820 0.69 0.881369
Target:  5'- uGCCGA--CggGCUACGCGCAUUcCUg -3'
miRNA:   3'- -CGGCUauGuaCGGUGUGCGUAAuGAg -5'
1033 3' -49.4 NC_000924.1 + 11482 0.71 0.779886
Target:  5'- uGuuGAauuaGC-UGCCAUACGCGUUACUg -3'
miRNA:   3'- -CggCUa---UGuACGGUGUGCGUAAUGAg -5'
1033 3' -49.4 NC_000924.1 + 4202 0.72 0.71513
Target:  5'- aGCCGA-GCGcGCCGCugGCAUUcGCaUCa -3'
miRNA:   3'- -CGGCUaUGUaCGGUGugCGUAA-UG-AG- -5'
1033 3' -49.4 NC_000924.1 + 15960 0.72 0.703951
Target:  5'- cGCUGcuauugGCAUGCCuuGCACGCGUUuacCUCa -3'
miRNA:   3'- -CGGCua----UGUACGG--UGUGCGUAAu--GAG- -5'
1033 3' -49.4 NC_000924.1 + 24413 0.76 0.52274
Target:  5'- uCCGGUGCAgaaGCCACAgGCGUcacaacacUGCUCu -3'
miRNA:   3'- cGGCUAUGUa--CGGUGUgCGUA--------AUGAG- -5'
1033 3' -49.4 NC_000924.1 + 31581 0.77 0.469041
Target:  5'- uGCCGAUGCAUGCCGccUugGCAaUAUg- -3'
miRNA:   3'- -CGGCUAUGUACGGU--GugCGUaAUGag -5'
1033 3' -49.4 NC_000924.1 + 4078 1.14 0.002057
Target:  5'- aGCCGAUACAUGCCACACGCAUUACUCa -3'
miRNA:   3'- -CGGCUAUGUACGGUGUGCGUAAUGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.