miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10330 5' -52.9 NC_002687.1 + 145831 0.66 0.998253
Target:  5'- cGCCGAgGCgcgCGCCGggGCGcuGGGUCAGc -3'
miRNA:   3'- -CGGCUaCGaagGCGGC--UGU--UCUAGUC- -5'
10330 5' -52.9 NC_002687.1 + 108021 0.66 0.998253
Target:  5'- cGCCGAaaacGUUUCCGCCGGguaccguuuGGAUUGGu -3'
miRNA:   3'- -CGGCUa---CGAAGGCGGCUgu-------UCUAGUC- -5'
10330 5' -52.9 NC_002687.1 + 171592 0.66 0.998253
Target:  5'- aGCCauGUGCaaggCCGCgGACAAaauGGUCAGg -3'
miRNA:   3'- -CGGc-UACGaa--GGCGgCUGUU---CUAGUC- -5'
10330 5' -52.9 NC_002687.1 + 239846 0.66 0.997932
Target:  5'- cGCCGcgGCggaUGCUGGCAAGAg--- -3'
miRNA:   3'- -CGGCuaCGaagGCGGCUGUUCUaguc -5'
10330 5' -52.9 NC_002687.1 + 109778 0.66 0.997563
Target:  5'- uGCgGAUgccacGCUUCUGuuGGCGucGAUCGGa -3'
miRNA:   3'- -CGgCUA-----CGAAGGCggCUGUu-CUAGUC- -5'
10330 5' -52.9 NC_002687.1 + 320248 0.66 0.997563
Target:  5'- gGUCGAUGaacUCGUCGAguAGGUCGGa -3'
miRNA:   3'- -CGGCUACgaaGGCGGCUguUCUAGUC- -5'
10330 5' -52.9 NC_002687.1 + 3546 0.66 0.996502
Target:  5'- gGCCGAcuUGCUU-CGCaCGGaguccgagguaauuCAAGGUCAGa -3'
miRNA:   3'- -CGGCU--ACGAAgGCG-GCU--------------GUUCUAGUC- -5'
10330 5' -52.9 NC_002687.1 + 276870 0.67 0.996113
Target:  5'- uUCGAaGCUaCCGagGACGAGGUCGGa -3'
miRNA:   3'- cGGCUaCGAaGGCggCUGUUCUAGUC- -5'
10330 5' -52.9 NC_002687.1 + 205661 0.67 0.996113
Target:  5'- cGUCGAUGgaaacgcUCCGCCGAaAAGAauuUCAGa -3'
miRNA:   3'- -CGGCUACga-----AGGCGGCUgUUCU---AGUC- -5'
10330 5' -52.9 NC_002687.1 + 285409 0.67 0.9948
Target:  5'- uUCGGUGCUggaggaagCCGCUGGCAGGcuaguUCAa -3'
miRNA:   3'- cGGCUACGAa-------GGCGGCUGUUCu----AGUc -5'
10330 5' -52.9 NC_002687.1 + 73802 0.67 0.994726
Target:  5'- -aUGAUGCUguacaacggccagUCCGCCGGCGAGuuugcccUCAa -3'
miRNA:   3'- cgGCUACGA-------------AGGCGGCUGUUCu------AGUc -5'
10330 5' -52.9 NC_002687.1 + 89708 0.67 0.99402
Target:  5'- -aCGGUGUcUCCGCCGA---GGUCGGu -3'
miRNA:   3'- cgGCUACGaAGGCGGCUguuCUAGUC- -5'
10330 5' -52.9 NC_002687.1 + 215328 0.67 0.993509
Target:  5'- cGCCGGUGUcgaacgacugguccgUcUCCGCCGAUcggcagggAGGAUCGa -3'
miRNA:   3'- -CGGCUACG---------------A-AGGCGGCUG--------UUCUAGUc -5'
10330 5' -52.9 NC_002687.1 + 315824 0.67 0.993149
Target:  5'- cGCCgGGUGCcgCCGCCGcACccgAAGAUCc- -3'
miRNA:   3'- -CGG-CUACGaaGGCGGC-UG---UUCUAGuc -5'
10330 5' -52.9 NC_002687.1 + 169474 0.67 0.993149
Target:  5'- cGUCGAguggGaucgCCGUCGACAAGGUCu- -3'
miRNA:   3'- -CGGCUa---Cgaa-GGCGGCUGUUCUAGuc -5'
10330 5' -52.9 NC_002687.1 + 329117 0.68 0.992179
Target:  5'- cGCCGAUGCUcuuggCCaCCGAUccuuGGGGUCuGg -3'
miRNA:   3'- -CGGCUACGAa----GGcGGCUG----UUCUAGuC- -5'
10330 5' -52.9 NC_002687.1 + 293712 0.68 0.991973
Target:  5'- gGCCGggGaaguaaacugUUGCCGGCAAGGUCAa -3'
miRNA:   3'- -CGGCuaCgaa-------GGCGGCUGUUCUAGUc -5'
10330 5' -52.9 NC_002687.1 + 167887 0.68 0.988604
Target:  5'- uGCCGcgaaGCUUCCGCgGcGCAacGGAUCAc -3'
miRNA:   3'- -CGGCua--CGAAGGCGgC-UGU--UCUAGUc -5'
10330 5' -52.9 NC_002687.1 + 159948 0.68 0.986862
Target:  5'- aGCCGggGCggccaaggcagCCGCCGcCAAGGcCAGu -3'
miRNA:   3'- -CGGCuaCGaa---------GGCGGCuGUUCUaGUC- -5'
10330 5' -52.9 NC_002687.1 + 297991 0.68 0.985591
Target:  5'- gGCCGccaccGCUUCCGaCUGGCGAGG-CGGc -3'
miRNA:   3'- -CGGCua---CGAAGGC-GGCUGUUCUaGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.