miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10331 5' -50.5 NC_002687.1 + 272729 0.66 0.999891
Target:  5'- cCUUUUuUUaGCGUCcAUCGGAGCUCg -3'
miRNA:   3'- -GAAGAcAAcCGCAGcUAGCCUUGAGg -5'
10331 5' -50.5 NC_002687.1 + 257496 0.66 0.999861
Target:  5'- uCUUCgGUUucGCGUCGAucgUCGGAauguauGCUCUg -3'
miRNA:   3'- -GAAGaCAAc-CGCAGCU---AGCCU------UGAGG- -5'
10331 5' -50.5 NC_002687.1 + 122623 0.66 0.999861
Target:  5'- uUUCU--UGGCGUCGAUgaCaGAcGCUCCu -3'
miRNA:   3'- gAAGAcaACCGCAGCUA--GcCU-UGAGG- -5'
10331 5' -50.5 NC_002687.1 + 273410 0.67 0.999654
Target:  5'- gUUCUGUUGGCGcuucgCGAaUGcAugUCCg -3'
miRNA:   3'- gAAGACAACCGCa----GCUaGCcUugAGG- -5'
10331 5' -50.5 NC_002687.1 + 95546 0.67 0.999572
Target:  5'- gCUUCaccUGGUGUgGGgugaGGAACUCCg -3'
miRNA:   3'- -GAAGacaACCGCAgCUag--CCUUGAGG- -5'
10331 5' -50.5 NC_002687.1 + 156116 0.67 0.999473
Target:  5'- -aUCcGUUGuCGUCGAggaCGGGACgUCCg -3'
miRNA:   3'- gaAGaCAACcGCAGCUa--GCCUUG-AGG- -5'
10331 5' -50.5 NC_002687.1 + 72429 0.67 0.999355
Target:  5'- -gUCUGUcugUGGCGacgCGAgcccaUGGAACUCg -3'
miRNA:   3'- gaAGACA---ACCGCa--GCUa----GCCUUGAGg -5'
10331 5' -50.5 NC_002687.1 + 132370 0.68 0.999049
Target:  5'- ------aUGGCaUCGAUCGGuguGGCUCCg -3'
miRNA:   3'- gaagacaACCGcAGCUAGCC---UUGAGG- -5'
10331 5' -50.5 NC_002687.1 + 159745 0.68 0.998855
Target:  5'- -cUCUGUcGGCGUCG-UCGGcuuguGCcaUCCu -3'
miRNA:   3'- gaAGACAaCCGCAGCuAGCCu----UG--AGG- -5'
10331 5' -50.5 NC_002687.1 + 308615 0.68 0.998627
Target:  5'- -gUCUGgggUGGUGagGggCGGAGC-CCg -3'
miRNA:   3'- gaAGACa--ACCGCagCuaGCCUUGaGG- -5'
10331 5' -50.5 NC_002687.1 + 305167 0.69 0.998022
Target:  5'- --gUUG-UGGCGUCGGUUGGGcggacguACUUCg -3'
miRNA:   3'- gaaGACaACCGCAGCUAGCCU-------UGAGG- -5'
10331 5' -50.5 NC_002687.1 + 254212 0.69 0.996303
Target:  5'- ---gUGUUGGaCG-CGAUCGucaaGAGCUCCa -3'
miRNA:   3'- gaagACAACC-GCaGCUAGC----CUUGAGG- -5'
10331 5' -50.5 NC_002687.1 + 232778 0.71 0.990256
Target:  5'- uCUUCUGcaUGGCGUCugcuucCGGGGCUUCg -3'
miRNA:   3'- -GAAGACa-ACCGCAGcua---GCCUUGAGG- -5'
10331 5' -50.5 NC_002687.1 + 207997 0.71 0.987555
Target:  5'- aCUUCcGggaUGGCGUCgGGUCGGAGuacCUCUg -3'
miRNA:   3'- -GAAGaCa--ACCGCAG-CUAGCCUU---GAGG- -5'
10331 5' -50.5 NC_002687.1 + 13327 0.73 0.973415
Target:  5'- aCUUCUGUUgccGGCGcugcugUGAUCGGcugcGCUCCu -3'
miRNA:   3'- -GAAGACAA---CCGCa-----GCUAGCCu---UGAGG- -5'
10331 5' -50.5 NC_002687.1 + 136032 0.73 0.961388
Target:  5'- cCUUCUcUUGGCGUUcaGGUCcGGAaACUCCa -3'
miRNA:   3'- -GAAGAcAACCGCAG--CUAG-CCU-UGAGG- -5'
10331 5' -50.5 NC_002687.1 + 109766 1.14 0.012734
Target:  5'- gCUUCUGUUGGCGUCGAUCGGAACUCCg -3'
miRNA:   3'- -GAAGACAACCGCAGCUAGCCUUGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.