miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10332 3' -58.1 NC_002687.1 + 173288 0.66 0.936626
Target:  5'- gGACGCCAgcagccucgauaGCGCGGGCGACa--GCAg -3'
miRNA:   3'- -UUGCGGUg-----------CGUGUCCGCUGacaCGUg -5'
10332 3' -58.1 NC_002687.1 + 201868 0.66 0.932359
Target:  5'- aGugGCuCACGCgcgcucgggcgggGCAGGCGGgUGUGUu- -3'
miRNA:   3'- -UugCG-GUGCG-------------UGUCCGCUgACACGug -5'
10332 3' -58.1 NC_002687.1 + 129789 0.66 0.927915
Target:  5'- gAAUGCguCGUuccCGGGCGugaUGUGCACa -3'
miRNA:   3'- -UUGCGguGCGu--GUCCGCug-ACACGUG- -5'
10332 3' -58.1 NC_002687.1 + 128446 0.66 0.927915
Target:  5'- gAACGgUGCGUGgAGGCGGCg--GCACa -3'
miRNA:   3'- -UUGCgGUGCGUgUCCGCUGacaCGUG- -5'
10332 3' -58.1 NC_002687.1 + 34282 0.66 0.922771
Target:  5'- aGAgGCCuuGCACGauGcGCGACUG-GCGCu -3'
miRNA:   3'- -UUgCGGugCGUGU--C-CGCUGACaCGUG- -5'
10332 3' -58.1 NC_002687.1 + 155147 0.66 0.922771
Target:  5'- uACGCCgACGaCGCGgugucuacGGCGG-UGUGCACa -3'
miRNA:   3'- uUGCGG-UGC-GUGU--------CCGCUgACACGUG- -5'
10332 3' -58.1 NC_002687.1 + 18008 0.66 0.922771
Target:  5'- aAGCGCguaGCGCGCgaggAGGaCGACUGUGguaGCg -3'
miRNA:   3'- -UUGCGg--UGCGUG----UCC-GCUGACACg--UG- -5'
10332 3' -58.1 NC_002687.1 + 201748 0.66 0.922244
Target:  5'- cGGCGUacacugaaCAgGUACAGGCaaaccuugccuacGACUGUGCAUg -3'
miRNA:   3'- -UUGCG--------GUgCGUGUCCG-------------CUGACACGUG- -5'
10332 3' -58.1 NC_002687.1 + 182871 0.66 0.917408
Target:  5'- cGAgGCCuCGUACAGGCGugUGcUGgGa -3'
miRNA:   3'- -UUgCGGuGCGUGUCCGCugAC-ACgUg -5'
10332 3' -58.1 NC_002687.1 + 121946 0.66 0.917408
Target:  5'- cGACGUCACGUACGcGGacauucugcaGGC-GUGCACg -3'
miRNA:   3'- -UUGCGGUGCGUGU-CCg---------CUGaCACGUG- -5'
10332 3' -58.1 NC_002687.1 + 205997 0.66 0.911829
Target:  5'- cGACGCuCACGU--GGGUGAaaagcgGUGCACa -3'
miRNA:   3'- -UUGCG-GUGCGugUCCGCUga----CACGUG- -5'
10332 3' -58.1 NC_002687.1 + 111078 0.67 0.902454
Target:  5'- -cCGaUCGCGUGCAGGCaGACuugccuaccuuggucUGUGCACa -3'
miRNA:   3'- uuGC-GGUGCGUGUCCG-CUG---------------ACACGUG- -5'
10332 3' -58.1 NC_002687.1 + 299529 0.67 0.900025
Target:  5'- gAGCGCUACGgACAGGaaGCUGgucGCAa -3'
miRNA:   3'- -UUGCGGUGCgUGUCCgcUGACa--CGUg -5'
10332 3' -58.1 NC_002687.1 + 329955 0.67 0.900025
Target:  5'- -uCGaCCAgGaaCAUAGGCGACgccGUGCACg -3'
miRNA:   3'- uuGC-GGUgC--GUGUCCGCUGa--CACGUG- -5'
10332 3' -58.1 NC_002687.1 + 241823 0.67 0.900025
Target:  5'- cAGCGUCGacaaGCugGcggaauucuuGGCGACgGUGCACg -3'
miRNA:   3'- -UUGCGGUg---CGugU----------CCGCUGaCACGUG- -5'
10332 3' -58.1 NC_002687.1 + 136545 0.67 0.893804
Target:  5'- cAAC-CCACGCAUGGGaggaACUGUGCGa -3'
miRNA:   3'- -UUGcGGUGCGUGUCCgc--UGACACGUg -5'
10332 3' -58.1 NC_002687.1 + 21842 0.67 0.893804
Target:  5'- uGCGCaCACGCugGcGGCGGgggaacCUGUGgACa -3'
miRNA:   3'- uUGCG-GUGCGugU-CCGCU------GACACgUG- -5'
10332 3' -58.1 NC_002687.1 + 256215 0.67 0.89317
Target:  5'- -gUGCCGacacgggUGCGCAGGCGACgGU-CACg -3'
miRNA:   3'- uuGCGGU-------GCGUGUCCGCUGaCAcGUG- -5'
10332 3' -58.1 NC_002687.1 + 248355 0.67 0.88074
Target:  5'- aGACgGCgGCGUACAuGGCGAU--UGCACa -3'
miRNA:   3'- -UUG-CGgUGCGUGU-CCGCUGacACGUG- -5'
10332 3' -58.1 NC_002687.1 + 332252 0.68 0.86687
Target:  5'- cGGCGCUuggGCGUGgAGGCGAUUGcgGCAUc -3'
miRNA:   3'- -UUGCGG---UGCGUgUCCGCUGACa-CGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.