miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10332 5' -54.9 NC_002687.1 + 293268 0.66 0.986758
Target:  5'- -gGGGUGAG-CUGgCUGCACGUGc-- -3'
miRNA:   3'- caUCCGUUCaGACgGACGUGCGCuag -5'
10332 5' -54.9 NC_002687.1 + 116382 0.66 0.983367
Target:  5'- --cGGCAAuGUCUuCCUcCACGCGAUa -3'
miRNA:   3'- cauCCGUU-CAGAcGGAcGUGCGCUAg -5'
10332 5' -54.9 NC_002687.1 + 99543 0.66 0.979357
Target:  5'- -aAGGCGGucGUCgcgGCgCU-CGCGCGAUCg -3'
miRNA:   3'- caUCCGUU--CAGa--CG-GAcGUGCGCUAG- -5'
10332 5' -54.9 NC_002687.1 + 154315 0.66 0.979357
Target:  5'- --cGGCGAG-CUGCgcaaCUGCGaccaaGCGGUCg -3'
miRNA:   3'- cauCCGUUCaGACG----GACGUg----CGCUAG- -5'
10332 5' -54.9 NC_002687.1 + 215243 0.66 0.979357
Target:  5'- --uGGCuccaucUCUGCCgGgGCGCGGUCa -3'
miRNA:   3'- cauCCGuuc---AGACGGaCgUGCGCUAG- -5'
10332 5' -54.9 NC_002687.1 + 75125 0.67 0.977102
Target:  5'- aGUGGaGCAAaauGUUUGCCgGUAUGCGAa- -3'
miRNA:   3'- -CAUC-CGUU---CAGACGGaCGUGCGCUag -5'
10332 5' -54.9 NC_002687.1 + 267835 0.67 0.974671
Target:  5'- -cAGGCGGucGUCUGUggaGCGCGCGGUa -3'
miRNA:   3'- caUCCGUU--CAGACGga-CGUGCGCUAg -5'
10332 5' -54.9 NC_002687.1 + 39856 0.67 0.969254
Target:  5'- --uGGCucGUCcGcCCUGCACaauGCGAUCa -3'
miRNA:   3'- cauCCGuuCAGaC-GGACGUG---CGCUAG- -5'
10332 5' -54.9 NC_002687.1 + 26499 0.67 0.969254
Target:  5'- -gGGGCAucaguGUCacauuCCUGCACGUGAUg -3'
miRNA:   3'- caUCCGUu----CAGac---GGACGUGCGCUAg -5'
10332 5' -54.9 NC_002687.1 + 80602 0.67 0.963058
Target:  5'- cUAGGCGAGUCcaagggUGCCaugGCG-GUGGUCg -3'
miRNA:   3'- cAUCCGUUCAG------ACGGa--CGUgCGCUAG- -5'
10332 5' -54.9 NC_002687.1 + 257569 0.68 0.952213
Target:  5'- ---aGCAAGUCucguccagcuUGCgUGCACGgGAUCa -3'
miRNA:   3'- caucCGUUCAG----------ACGgACGUGCgCUAG- -5'
10332 5' -54.9 NC_002687.1 + 104248 0.68 0.943903
Target:  5'- cUGGGCAAuuuccGUCUGCCaUGUGaucaGUGAUCg -3'
miRNA:   3'- cAUCCGUU-----CAGACGG-ACGUg---CGCUAG- -5'
10332 5' -54.9 NC_002687.1 + 306225 0.71 0.875241
Target:  5'- -cGGGUggGUUUGuCCUGCugGUGuuuUCa -3'
miRNA:   3'- caUCCGuuCAGAC-GGACGugCGCu--AG- -5'
10332 5' -54.9 NC_002687.1 + 48127 0.71 0.845517
Target:  5'- gGUGGcGCAGGUgUGCCgGC-CaGCGAUCa -3'
miRNA:   3'- -CAUC-CGUUCAgACGGaCGuG-CGCUAG- -5'
10332 5' -54.9 NC_002687.1 + 201375 0.75 0.646721
Target:  5'- cGUAGGCAAgGUUUGCCUGUaccuguucaguguacGcCGCGGUCu -3'
miRNA:   3'- -CAUCCGUU-CAGACGGACG---------------U-GCGCUAG- -5'
10332 5' -54.9 NC_002687.1 + 111441 1.1 0.005977
Target:  5'- gGUAGGCAAGUCUGCCUGCACGCGAUCg -3'
miRNA:   3'- -CAUCCGUUCAGACGGACGUGCGCUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.