miRNA display CGI


Results 1 - 20 of 24 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10333 3' -47.9 NC_002687.1 + 327782 0.66 0.999997
Target:  5'- gAUCGUCgaggGCaUUGAUucUCGCAguaguauuaAACGCUg -3'
miRNA:   3'- -UAGCAGa---CGcAACUA--AGUGU---------UUGCGG- -5'
10333 3' -47.9 NC_002687.1 + 2016 0.66 0.999996
Target:  5'- --aGUCaGCG-UGGUaCACGAACGCg -3'
miRNA:   3'- uagCAGaCGCaACUAaGUGUUUGCGg -5'
10333 3' -47.9 NC_002687.1 + 279195 0.66 0.999994
Target:  5'- -gCGUUUGgggacaaGUUGAUuuUUAUAGACGCCu -3'
miRNA:   3'- uaGCAGACg------CAACUA--AGUGUUUGCGG- -5'
10333 3' -47.9 NC_002687.1 + 9914 0.66 0.999991
Target:  5'- -aCGUCUGgaCGggGGccucUCACAcuGACGCCg -3'
miRNA:   3'- uaGCAGAC--GCaaCUa---AGUGU--UUGCGG- -5'
10333 3' -47.9 NC_002687.1 + 249192 0.67 0.999988
Target:  5'- -cCGUCUguuuaaGCGUg---UCAUAAAUGCCg -3'
miRNA:   3'- uaGCAGA------CGCAacuaAGUGUUUGCGG- -5'
10333 3' -47.9 NC_002687.1 + 114091 0.67 0.999988
Target:  5'- cGUCG-CUGCGgcagcGGUaaUCGCGGuCGCCg -3'
miRNA:   3'- -UAGCaGACGCaa---CUA--AGUGUUuGCGG- -5'
10333 3' -47.9 NC_002687.1 + 29217 0.67 0.999971
Target:  5'- -gUGUCgGCGgaGAccUUC-CGAGCGCCa -3'
miRNA:   3'- uaGCAGaCGCaaCU--AAGuGUUUGCGG- -5'
10333 3' -47.9 NC_002687.1 + 68205 0.67 0.999961
Target:  5'- uGUUGUgaGCGUaGAg-CGCGAGCGCUa -3'
miRNA:   3'- -UAGCAgaCGCAaCUaaGUGUUUGCGG- -5'
10333 3' -47.9 NC_002687.1 + 236767 0.67 0.999961
Target:  5'- gAUUGUCUaccGCGc----UCGCGAACGCCg -3'
miRNA:   3'- -UAGCAGA---CGCaacuaAGUGUUUGCGG- -5'
10333 3' -47.9 NC_002687.1 + 246949 0.68 0.999909
Target:  5'- uUUGUCucgcgggauacugUGgGUUGGUUCGCAagucGugGCCa -3'
miRNA:   3'- uAGCAG-------------ACgCAACUAAGUGU----UugCGG- -5'
10333 3' -47.9 NC_002687.1 + 40314 0.68 0.999909
Target:  5'- uUUGUCucgcgggauacugUGgGUUGGUUCGCAagucGugGCCa -3'
miRNA:   3'- uAGCAG-------------ACgCAACUAAGUGU----UugCGG- -5'
10333 3' -47.9 NC_002687.1 + 318966 0.68 0.999909
Target:  5'- uUUGUCucgcgggauacugUGgGUUGGUUCGCAagucGugGCCa -3'
miRNA:   3'- uAGCAG-------------ACgCAACUAAGUGU----UugCGG- -5'
10333 3' -47.9 NC_002687.1 + 131212 0.68 0.999885
Target:  5'- uGUCGUCUGUuaugagcaugauGggGAUg-AUAAACGCCa -3'
miRNA:   3'- -UAGCAGACG------------CaaCUAagUGUUUGCGG- -5'
10333 3' -47.9 NC_002687.1 + 103848 0.68 0.999848
Target:  5'- cUCGUCgGUGUUGAacucugCACccgucuuGAACGCCu -3'
miRNA:   3'- uAGCAGaCGCAACUaa----GUG-------UUUGCGG- -5'
10333 3' -47.9 NC_002687.1 + 21885 0.69 0.999829
Target:  5'- -gCGUCguacauguucucgaGCGUgcuUGuUUCGCGAACGCCg -3'
miRNA:   3'- uaGCAGa-------------CGCA---ACuAAGUGUUUGCGG- -5'
10333 3' -47.9 NC_002687.1 + 26631 0.69 0.999761
Target:  5'- -aCGUUUagcGUGUUGAUUCACAGaAUGCa -3'
miRNA:   3'- uaGCAGA---CGCAACUAAGUGUU-UGCGg -5'
10333 3' -47.9 NC_002687.1 + 290587 0.7 0.99942
Target:  5'- uGUUGUCUGCGUgug-UCAU--GCGCUg -3'
miRNA:   3'- -UAGCAGACGCAacuaAGUGuuUGCGG- -5'
10333 3' -47.9 NC_002687.1 + 50205 0.7 0.999287
Target:  5'- uUCGagaUGCGgUGAggugCGCGAGCGCCc -3'
miRNA:   3'- uAGCag-ACGCaACUaa--GUGUUUGCGG- -5'
10333 3' -47.9 NC_002687.1 + 136350 0.7 0.999287
Target:  5'- gAUCGUCUcagGUg---UCACAGGCGCCg -3'
miRNA:   3'- -UAGCAGAcg-CAacuaAGUGUUUGCGG- -5'
10333 3' -47.9 NC_002687.1 + 161707 0.7 0.999129
Target:  5'- gGUUGUUUGCGUU--UUUGCAucGCGCCg -3'
miRNA:   3'- -UAGCAGACGCAAcuAAGUGUu-UGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.