miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10333 5' -52.1 NC_002687.1 + 259554 0.66 0.999193
Target:  5'- -cGGCgCCGgcaacuUGAGCAAacagGCGCAgGCg -3'
miRNA:   3'- caCCGaGGCac----ACUUGUU----UGCGUgCG- -5'
10333 5' -52.1 NC_002687.1 + 10371 0.66 0.999193
Target:  5'- aGUGGCUgCGgcgacggggGUGGAgAAggcaGCGgACGCg -3'
miRNA:   3'- -CACCGAgGCa--------CACUUgUU----UGCgUGCG- -5'
10333 5' -52.1 NC_002687.1 + 321116 0.66 0.999177
Target:  5'- aUGGCaaacaaaaaacauUUCGUGU--ACAAGCGCugGUu -3'
miRNA:   3'- cACCG-------------AGGCACAcuUGUUUGCGugCG- -5'
10333 5' -52.1 NC_002687.1 + 226506 0.66 0.998823
Target:  5'- gGUGGCgCCGcUG-GGACugauGGCGC-CGCu -3'
miRNA:   3'- -CACCGaGGC-ACaCUUGu---UUGCGuGCG- -5'
10333 5' -52.1 NC_002687.1 + 300266 0.66 0.99859
Target:  5'- -gGGCUCgG-GUGGcuacgauugaaGCGAGCGCGacaGCa -3'
miRNA:   3'- caCCGAGgCaCACU-----------UGUUUGCGUg--CG- -5'
10333 5' -52.1 NC_002687.1 + 132285 0.66 0.99859
Target:  5'- aUGGCUCCGUGcaGGACuug-GUugGUg -3'
miRNA:   3'- cACCGAGGCACa-CUUGuuugCGugCG- -5'
10333 5' -52.1 NC_002687.1 + 68199 0.66 0.99859
Target:  5'- --uGCUCCuguUGUGAGCGuagAGCGCgaGCGCu -3'
miRNA:   3'- cacCGAGGc--ACACUUGU---UUGCG--UGCG- -5'
10333 5' -52.1 NC_002687.1 + 200954 0.66 0.99859
Target:  5'- aGUGGCUCaugcgcgcuCGggcgGGGCAGGCGgGCGUg -3'
miRNA:   3'- -CACCGAG---------GCaca-CUUGUUUGCgUGCG- -5'
10333 5' -52.1 NC_002687.1 + 224576 0.66 0.998319
Target:  5'- --aGCUCCuc--GAGCAGGCGCAgGCa -3'
miRNA:   3'- cacCGAGGcacaCUUGUUUGCGUgCG- -5'
10333 5' -52.1 NC_002687.1 + 253117 0.66 0.998005
Target:  5'- -cGGacugaUCCGUGUGuACGgucAGCGCACa- -3'
miRNA:   3'- caCCg----AGGCACACuUGU---UUGCGUGcg -5'
10333 5' -52.1 NC_002687.1 + 274057 0.66 0.998005
Target:  5'- -aGGUuccUCCGUGcgucaGAACAAcCGcCACGCg -3'
miRNA:   3'- caCCG---AGGCACa----CUUGUUuGC-GUGCG- -5'
10333 5' -52.1 NC_002687.1 + 23964 0.66 0.998005
Target:  5'- cGUGGCggcguggUgGUGUGGcaGCAguGACGCagaGCGCa -3'
miRNA:   3'- -CACCGa------GgCACACU--UGU--UUGCG---UGCG- -5'
10333 5' -52.1 NC_002687.1 + 114144 0.66 0.998005
Target:  5'- -gGGCUCUucucUGcUGGGCuuACGCugGCu -3'
miRNA:   3'- caCCGAGGc---AC-ACUUGuuUGCGugCG- -5'
10333 5' -52.1 NC_002687.1 + 226224 0.67 0.997644
Target:  5'- gGUGGCgugggcggCCGggacGAACAGACGgcUACGCa -3'
miRNA:   3'- -CACCGa-------GGCaca-CUUGUUUGC--GUGCG- -5'
10333 5' -52.1 NC_002687.1 + 316131 0.67 0.997644
Target:  5'- -cGGCaUCCG-GUGAgGCGGAUGCA-GCu -3'
miRNA:   3'- caCCG-AGGCaCACU-UGUUUGCGUgCG- -5'
10333 5' -52.1 NC_002687.1 + 145787 0.67 0.997644
Target:  5'- -cGGCgauggCCGccucGGACAugGACGCGCGCc -3'
miRNA:   3'- caCCGa----GGCaca-CUUGU--UUGCGUGCG- -5'
10333 5' -52.1 NC_002687.1 + 312911 0.67 0.997644
Target:  5'- --cGCgaUCCGUGaGGGCAGAUGC-CGCg -3'
miRNA:   3'- cacCG--AGGCACaCUUGUUUGCGuGCG- -5'
10333 5' -52.1 NC_002687.1 + 4800 0.67 0.997229
Target:  5'- -cGGCUCCcUGUGcccGCAcuGCGCGUGCa -3'
miRNA:   3'- caCCGAGGcACACu--UGUu-UGCGUGCG- -5'
10333 5' -52.1 NC_002687.1 + 25173 0.67 0.997229
Target:  5'- -cGGCagCCGaaaGAGCAGAUGCACuGCa -3'
miRNA:   3'- caCCGa-GGCacaCUUGUUUGCGUG-CG- -5'
10333 5' -52.1 NC_002687.1 + 44700 0.67 0.997229
Target:  5'- ---cCUCCGUGUGuuccCcGGCGUACGCg -3'
miRNA:   3'- caccGAGGCACACuu--GuUUGCGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.