miRNA display CGI


Results 21 - 40 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10333 5' -52.1 NC_002687.1 + 162132 0.67 0.996755
Target:  5'- uGUGGCUCaugcucgaCGUGauUGAAUu--CGCugGCa -3'
miRNA:   3'- -CACCGAG--------GCAC--ACUUGuuuGCGugCG- -5'
10333 5' -52.1 NC_002687.1 + 60466 0.67 0.995607
Target:  5'- -gGGCauacucUUCGUGcaaaaUGAAUcgGCGCACGCa -3'
miRNA:   3'- caCCG------AGGCAC-----ACUUGuuUGCGUGCG- -5'
10333 5' -52.1 NC_002687.1 + 237089 0.69 0.990063
Target:  5'- -cGGCuUCCGcggaUGaUGGACGAAUGCAgCGCc -3'
miRNA:   3'- caCCG-AGGC----AC-ACUUGUUUGCGU-GCG- -5'
10333 5' -52.1 NC_002687.1 + 202772 0.69 0.990063
Target:  5'- --cGCUCCGUGauGACGAACGUcUGCa -3'
miRNA:   3'- cacCGAGGCACacUUGUUUGCGuGCG- -5'
10333 5' -52.1 NC_002687.1 + 197005 0.69 0.988756
Target:  5'- -cGGgUCgGUcGUGAgGCAAACGUACGUu -3'
miRNA:   3'- caCCgAGgCA-CACU-UGUUUGCGUGCG- -5'
10333 5' -52.1 NC_002687.1 + 222596 0.69 0.988756
Target:  5'- -cGGgUCgGUcGUGAgGCAAACGUACGUu -3'
miRNA:   3'- caCCgAGgCA-CACU-UGUUUGCGUGCG- -5'
10333 5' -52.1 NC_002687.1 + 58288 0.69 0.985744
Target:  5'- cUGGUUCaacgccaaGUGUGuucACGGugGUACGCa -3'
miRNA:   3'- cACCGAGg-------CACACu--UGUUugCGUGCG- -5'
10333 5' -52.1 NC_002687.1 + 330595 0.69 0.984024
Target:  5'- cGUGGCgauucaCGUacGUGGcauGCAAcACGCGCGCa -3'
miRNA:   3'- -CACCGag----GCA--CACU---UGUU-UGCGUGCG- -5'
10333 5' -52.1 NC_002687.1 + 9868 0.69 0.984024
Target:  5'- cGUGGCgcauuggugCCGUGUcGGACAAACaacugcgaGaCACGCu -3'
miRNA:   3'- -CACCGa--------GGCACA-CUUGUUUG--------C-GUGCG- -5'
10333 5' -52.1 NC_002687.1 + 80466 0.7 0.980118
Target:  5'- cGUuGCUCCG-GUGGGCAAGCGCcuACa- -3'
miRNA:   3'- -CAcCGAGGCaCACUUGUUUGCG--UGcg -5'
10333 5' -52.1 NC_002687.1 + 140692 0.7 0.977918
Target:  5'- gGUGGCUCacagaGUcaagGGACAGGCGcCAUGCu -3'
miRNA:   3'- -CACCGAGg----CAca--CUUGUUUGC-GUGCG- -5'
10333 5' -52.1 NC_002687.1 + 161792 0.7 0.975542
Target:  5'- -gGGCUCaCG-GUGAcCAuuucGCGCACGUg -3'
miRNA:   3'- caCCGAG-GCaCACUuGUu---UGCGUGCG- -5'
10333 5' -52.1 NC_002687.1 + 154453 0.7 0.975295
Target:  5'- -gGGCaUCCGUcGUGuucuggaGGCGacGACGCACGCc -3'
miRNA:   3'- caCCG-AGGCA-CAC-------UUGU--UUGCGUGCG- -5'
10333 5' -52.1 NC_002687.1 + 118333 0.7 0.972985
Target:  5'- uGUGGCgacacgaCGUGUGuggcuAGCGGAUGCAUGUa -3'
miRNA:   3'- -CACCGag-----GCACAC-----UUGUUUGCGUGCG- -5'
10333 5' -52.1 NC_002687.1 + 145296 0.71 0.97024
Target:  5'- -aGGCUUCGgagagcguUGUGAACG-GCGCGgGCa -3'
miRNA:   3'- caCCGAGGC--------ACACUUGUuUGCGUgCG- -5'
10333 5' -52.1 NC_002687.1 + 142731 0.71 0.967301
Target:  5'- aGUGGCUuuGcGUGuAGCGAAUGCugugaucgaACGCa -3'
miRNA:   3'- -CACCGAggCaCAC-UUGUUUGCG---------UGCG- -5'
10333 5' -52.1 NC_002687.1 + 311898 0.71 0.964163
Target:  5'- -aGGCaggacgagCGUGUGAcACAGACGCACGg -3'
miRNA:   3'- caCCGag------GCACACU-UGUUUGCGUGCg -5'
10333 5' -52.1 NC_002687.1 + 134064 0.71 0.957266
Target:  5'- -gGGCUCCGguggUGUGAACAuuCuCGCGUc -3'
miRNA:   3'- caCCGAGGC----ACACUUGUuuGcGUGCG- -5'
10333 5' -52.1 NC_002687.1 + 254974 0.72 0.936224
Target:  5'- -aGGCcUCGUGUGAACucaGAACGCACc- -3'
miRNA:   3'- caCCGaGGCACACUUG---UUUGCGUGcg -5'
10333 5' -52.1 NC_002687.1 + 110339 0.72 0.931343
Target:  5'- uUGGCgcgUUCGUGUGc-CAAAUGCAUGCg -3'
miRNA:   3'- cACCG---AGGCACACuuGUUUGCGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.